Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_020220.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_020220.2 0 3.03 2.60 0.67 -1.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020220.2 SmLINC00372-IBu 0.83 1.00e-04 1.60e-03
Smp_020220.2 SmLINC03395-IBu 0.86 3.49e-05 6.00e-04
Smp_020220.2 SmLINC04074-IBu 0.91 1.69e-06 7.46e-05
Smp_020220.2 SmLINC06489-IBu 0.80 2.00e-04 2.90e-03
Smp_020220.2 SmLINC06490-IBu 0.80 2.00e-04 2.70e-03