Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_020080.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
Smp_020080.2 0 6.03 4.29 10.17 11.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020080.2 SmLINC00001-IBu 0.83 8.97e-05 1.30e-03
Smp_020080.2 SmLINC00007-IBu 0.89 8.19e-06 2.00e-04
Smp_020080.2 SmLINC00266-IBu 0.87 1.63e-05 3.00e-04
Smp_020080.2 SmLINC01520-IBu 0.82 1.00e-04 2.00e-03
Smp_020080.2 SmLINC02394-IBu 0.92 1.00e-06 5.13e-05
Smp_020080.2 SmLINC02539-IBu 0.87 2.08e-05 4.00e-04
Smp_020080.2 SmLINC02540-IBu 0.92 6.82e-07 3.91e-05
Smp_020080.2 SmLINC02577-IBu 0.85 4.82e-05 8.00e-04
Smp_020080.2 SmLINC02776-IBu 0.89 7.44e-06 2.00e-04
Smp_020080.2 SmLINC02783-IBu 0.82 1.00e-04 1.80e-03
Smp_020080.2 SmLINC03326-IBu 0.88 1.25e-05 3.00e-04
Smp_020080.2 SmLINC04237-IBu 0.85 5.20e-05 8.00e-04
Smp_020080.2 SmLINC05289-IBu 0.85 5.00e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00399-IBu 0 -0.05 0.72 3.04 4.49
SmLINC00572-IBu 0 0.00 0.00 8.71 9.96
SmLINC01011-IBu 0 0.76 -0.55 1.79 3.82
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02535-IBu 0 0.00 2.95 8.24 10.10
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
Smp_020080.2 0 6.03 4.29 10.17 11.72
Smp_051500.1 0 1.85 2.93 6.64 8.28
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_141170.1 0 0.00 0.00 5.53 8.67
Smp_161070.1 0 0.45 2.17 4.08 5.39
Smp_162580.1 0 1.31 -3.23 3.63 5.05
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_200450.1 0 4.56 4.87 7.72 9.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020080.2 SmLINC00399-IBu 0.90 2.81e-06 1.00e-04
Smp_020080.2 SmLINC00572-IBu 0.96 8.71e-09 2.08e-06
Smp_020080.2 SmLINC01011-IBu 0.91 1.93e-06 8.49e-05
Smp_020080.2 SmLINC02394-IBu 0.92 1.00e-06 5.34e-05
Smp_020080.2 SmLINC02535-IBu 0.91 1.76e-06 7.96e-05
Smp_020080.2 SmLINC02540-IBu 0.92 6.82e-07 4.08e-05
Smp_020080.2 Smp_051500.1 0.91 2.13e-06 9.11e-05
Smp_083430.1 Smp_020080.2 0.91 1.68e-06 7.72e-05
Smp_141170.1 Smp_020080.2 0.93 1.96e-07 1.72e-05
Smp_161070.1 Smp_020080.2 0.90 4.06e-06 1.00e-04
Smp_162580.1 Smp_020080.2 0.93 1.96e-07 1.71e-05
Smp_163700.1 Smp_020080.2 0.90 3.41e-06 1.00e-04
Smp_020080.2 Smp_200450.1 0.91 1.81e-06 8.11e-05