Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_019940.5 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_019940.5 0 1.01 3.12 -6.73 1.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_019940.5 SmLINC00372-IBu 0.92 5.49e-07 3.36e-05
Smp_019940.5 SmLINC01316-IBu 0.82 1.00e-04 2.00e-03
Smp_019940.5 SmLINC02646-IBu 0.83 1.00e-04 1.60e-03
Smp_019940.5 SmLINC04430-IBu 0.90 2.56e-06 1.00e-04
Smp_019940.5 SmLINC05559-IBu 0.91 1.90e-06 8.10e-05
Smp_019940.5 SmLINC06700-IBu 0.96 7.63e-09 1.78e-06
Smp_019940.5 SmLINC06836-IBu 0.95 5.37e-08 6.69e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_006830.1 0 -0.91 -12.50 -0.79 -0.49
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_019940.5 Smp_006830.1 -0.91 1.61e-06 7.46e-05
Smp_010140.2 Smp_019940.5 0.90 4.77e-06 1.00e-04
Smp_019940.5 Smp_032120.1 0.94 9.74e-08 1.06e-05
Smp_019940.5 Smp_034840.1 0.91 1.84e-06 8.20e-05
Smp_019940.5 Smp_036270.3 0.92 1.14e-06 5.86e-05
Smp_019940.5 Smp_062070.1 0.92 8.63e-07 4.81e-05
Smp_063650.3 Smp_019940.5 0.96 6.71e-09 1.75e-06
Smp_019940.5 Smp_084940.2 0.90 2.91e-06 1.00e-04
Smp_019940.5 Smp_098370.1 0.93 2.68e-07 2.13e-05
Smp_019940.5 Smp_099160.4 0.92 6.63e-07 4.00e-05
Smp_103540.1 Smp_019940.5 0.91 2.15e-06 9.17e-05
Smp_019940.5 Smp_159070.3 0.90 4.36e-06 1.00e-04
Smp_019940.5 Smp_159150.1 0.90 4.18e-06 1.00e-04