Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_019750.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_019750.1 0 2.54 -3.63 4.60 3.84

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_019750.1 SmLINC00171-IBu 0.85 5.97e-05 9.00e-04
Smp_019750.1 SmLINC00369-IBu 0.82 1.00e-04 2.00e-03
Smp_019750.1 SmLINC00477-IBu 0.90 3.16e-06 1.00e-04
Smp_019750.1 SmLINC00484-IBu 0.90 4.18e-06 1.00e-04
Smp_019750.1 SmLINC00548-IBu 0.81 2.00e-04 2.40e-03
Smp_019750.1 SmLINC00633-IBu 0.89 7.77e-06 2.00e-04
Smp_019750.1 SmLINC01066-IBu 0.83 8.93e-05 1.30e-03
Smp_019750.1 SmLINC01122-IBu 0.82 1.00e-04 2.10e-03
Smp_019750.1 SmLINC01139-IBu 0.87 1.62e-05 3.00e-04
Smp_019750.1 SmLINC01433-IBu 0.89 6.17e-06 1.00e-04
Smp_019750.1 SmLINC01435-IBu 0.88 1.41e-05 3.00e-04
Smp_019750.1 SmLINC01538-IBu 0.85 4.64e-05 8.00e-04
Smp_019750.1 SmLINC01569-IBu 0.83 1.00e-04 1.50e-03
Smp_019750.1 SmLINC01746-IBu 0.83 1.00e-04 1.50e-03
Smp_019750.1 SmLINC01822-IBu 0.88 1.01e-05 2.00e-04
Smp_019750.1 SmLINC03309-IBu 0.87 2.20e-05 4.00e-04
Smp_019750.1 SmLINC03542-IBu 0.92 8.17e-07 4.44e-05
Smp_019750.1 SmLINC03693-IBu 0.87 2.25e-05 4.00e-04
Smp_019750.1 SmLINC04054-IBu 0.85 5.69e-05 9.00e-04
Smp_019750.1 SmLINC04345-IBu 0.84 7.77e-05 1.10e-03
Smp_019750.1 SmLINC04478-IBu 0.82 1.00e-04 1.70e-03
Smp_019750.1 SmLINC04521-IBu 0.87 1.68e-05 3.00e-04
Smp_019750.1 SmLINC04663-IBu 0.87 1.88e-05 4.00e-04
Smp_019750.1 SmLINC04747-IBu 0.81 2.00e-04 2.50e-03
Smp_019750.1 SmLINC04759-IBu 0.80 2.00e-04 3.00e-03
Smp_019750.1 SmLINC04769-IBu 0.83 9.09e-05 1.30e-03
Smp_019750.1 SmLINC05009-IBu 0.81 2.00e-04 2.70e-03
Smp_019750.1 SmLINC05147-IBu 0.85 5.13e-05 8.00e-04
Smp_019750.1 SmLINC05171-IBu 0.86 3.39e-05 6.00e-04
Smp_019750.1 SmLINC05258-IBu 0.85 5.17e-05 8.00e-04
Smp_019750.1 SmLINC06007-IBu 0.83 1.00e-04 1.50e-03
Smp_019750.1 SmLINC06145-IBu 0.85 5.15e-05 8.00e-04
Smp_019750.1 SmLINC06221-IBu 0.86 2.81e-05 5.00e-04
Smp_019750.1 SmLINC06444-IBu 0.81 2.00e-04 2.50e-03
Smp_019750.1 SmLINC06449-IBu 0.82 1.00e-04 1.80e-03
Smp_019750.1 SmLINC06536-IBu 0.84 8.48e-05 1.20e-03
Smp_019750.1 SmLINC06538-IBu 0.87 2.30e-05 4.00e-04
Smp_019750.1 SmLINC06543-IBu 0.88 1.03e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_019750.1 0 2.54 -3.63 4.60 3.84
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_019750.1 Smp_005470.1 0.91 1.95e-06 8.56e-05
Smp_019750.1 Smp_081920.1 0.92 8.70e-07 4.84e-05
Smp_019750.1 Smp_082580.1 0.91 1.64e-06 7.56e-05
Smp_019750.1 Smp_105730.1 0.90 4.02e-06 1.00e-04
Smp_019750.1 Smp_123200.1 0.91 1.54e-06 7.26e-05
Smp_019750.1 Smp_131840.1 0.90 2.64e-06 1.00e-04
Smp_019750.1 Smp_154180.1 0.90 3.77e-06 1.00e-04
Smp_019750.1 Smp_172520.1 0.90 2.59e-06 1.00e-04
Smp_019750.1 Smp_194960.1 0.91 1.89e-06 8.36e-05
Smp_019750.1 Smp_194970.1 0.91 2.31e-06 9.65e-05