Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_018880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 SmLINC02039-IBu 0.85 5.31e-05 8.00e-04
Smp_018880.1 SmLINC02678-IBu 0.87 2.48e-05 5.00e-04
Smp_018880.1 SmLINC02888-IBu 0.85 5.53e-05 9.00e-04
Smp_018880.1 SmLINC04957-IBu 0.82 1.00e-04 1.80e-03
Smp_018880.1 SmLINC05989-IBu 0.88 1.13e-05 2.00e-04
Smp_018880.1 SmLINC06128-IBu 0.95 4.63e-08 6.05e-06
Smp_018880.1 SmLINC06903-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00674-IBu 0 -2.62 -2.93 -7.07 -6.23
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_159190.1 0 -3.70 -3.60 -3.46 -3.88
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_166950.1 0 -1.86 -2.33 -5.56 -4.94
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 SmLINC00674-IBu 0.90 3.91e-06 1.00e-04
Smp_018880.1 SmLINC00998-IBu 0.92 1.00e-06 5.33e-05
Smp_018880.1 SmLINC05095-IBu 0.91 1.27e-06 6.34e-05
Smp_018880.1 SmLINC06128-IBu 0.95 4.63e-08 6.41e-06
Smp_018880.1 SmLINC06240-IBu 0.90 3.86e-06 1.00e-04
Smp_002930.1 Smp_018880.1 0.90 3.34e-06 1.00e-04
Smp_003770.1 Smp_018880.1 0.95 1.92e-08 3.54e-06
Smp_005860.1 Smp_018880.1 0.96 7.63e-09 1.90e-06
Smp_006560.1 Smp_018880.1 0.97 3.43e-10 2.57e-07
Smp_014400.5 Smp_018880.1 0.98 8.97e-11 1.08e-07
Smp_019750.2 Smp_018880.1 0.99 1.79e-13 2.30e-09
Smp_018880.1 Smp_021730.1 0.95 3.30e-08 5.10e-06
Smp_018880.1 Smp_022430.1 0.97 5.67e-10 3.54e-07
Smp_018880.1 Smp_028990.2 0.94 7.54e-08 8.93e-06
Smp_030500.1 Smp_018880.1 0.97 1.28e-09 5.98e-07
Smp_033400.1 Smp_018880.1 0.92 7.24e-07 4.25e-05
Smp_033610.1 Smp_018880.1 0.98 3.77e-11 6.31e-08
Smp_034550.1 Smp_018880.1 0.93 2.51e-07 2.03e-05
Smp_035270.2 Smp_018880.1 0.91 1.92e-06 8.46e-05
Smp_036250.1 Smp_018880.1 0.92 6.00e-07 3.73e-05
Smp_038100.1 Smp_018880.1 0.94 8.85e-08 9.95e-06
Smp_038530.1 Smp_018880.1 0.91 1.32e-06 6.50e-05
Smp_038560.6 Smp_018880.1 0.91 1.74e-06 7.89e-05
Smp_042160.1 Smp_018880.1 0.96 2.44e-09 9.06e-07
Smp_018880.1 Smp_051230.3 0.93 3.06e-07 2.34e-05
Smp_052060.1 Smp_018880.1 0.96 3.00e-09 1.03e-06
Smp_055210.1 Smp_018880.1 0.92 8.11e-07 4.60e-05
Smp_018880.1 Smp_057060.1 0.98 9.04e-11 1.09e-07
Smp_018880.1 Smp_057790.1 0.97 6.45e-10 3.84e-07
Smp_061870.1 Smp_018880.1 0.97 4.11e-10 2.88e-07
Smp_061940.1 Smp_018880.1 0.93 2.07e-07 1.78e-05
Smp_063090.1 Smp_018880.1 0.94 1.20e-07 1.22e-05
Smp_018880.1 Smp_071380.2 0.96 9.12e-09 2.14e-06
Smp_074570.1 Smp_018880.1 0.93 3.87e-07 2.75e-05
Smp_018880.1 Smp_079220.1 0.97 1.61e-09 6.91e-07
Smp_079920.1 Smp_018880.1 0.93 4.66e-07 3.13e-05
Smp_083720.1 Smp_018880.1 0.95 4.59e-08 6.37e-06
Smp_018880.1 Smp_085290.3 0.92 7.20e-07 4.24e-05
Smp_092320.1 Smp_018880.1 0.92 7.11e-07 4.20e-05
Smp_097490.1 Smp_018880.1 0.94 1.45e-07 1.39e-05
Smp_097750.1 Smp_018880.1 0.94 1.91e-07 1.69e-05
Smp_099420.1 Smp_018880.1 0.95 2.41e-08 4.12e-06
Smp_018880.1 Smp_099670.1 0.95 5.06e-08 6.80e-06
Smp_102670.1 Smp_018880.1 0.98 5.54e-11 8.03e-08
Smp_018880.1 Smp_105610.1 0.91 1.83e-06 8.17e-05
Smp_106390.1 Smp_018880.1 0.96 4.72e-09 1.39e-06
Smp_018880.1 Smp_108050.1 0.96 1.38e-08 2.83e-06
Smp_110400.3 Smp_018880.1 0.92 7.79e-07 4.47e-05
Smp_018880.1 Smp_113760.1 0.90 4.57e-06 1.00e-04
Smp_114910.1 Smp_018880.1 0.97 1.31e-09 6.08e-07
Smp_018880.1 Smp_120920.3 0.95 5.04e-08 6.79e-06
Smp_125440.1 Smp_018880.1 0.93 4.19e-07 2.90e-05
Smp_133310.1 Smp_018880.1 0.94 7.78e-08 9.11e-06
Smp_018880.1 Smp_133770.1 0.95 1.87e-08 3.48e-06
Smp_134410.1 Smp_018880.1 0.97 3.71e-10 2.70e-07
Smp_018880.1 Smp_135250.1 0.95 2.26e-08 3.95e-06
Smp_145340.1 Smp_018880.1 0.96 1.36e-08 2.80e-06
Smp_145710.1 Smp_018880.1 0.94 1.11e-07 1.16e-05
Smp_145810.2 Smp_018880.1 0.92 6.93e-07 4.12e-05
Smp_148800.1 Smp_018880.1 0.90 4.63e-06 1.00e-04
Smp_149670.1 Smp_018880.1 0.95 1.75e-08 3.32e-06
Smp_150690.2 Smp_018880.1 0.91 1.62e-06 7.51e-05
Smp_152260.1 Smp_018880.1 0.96 8.32e-09 2.02e-06
Smp_018880.1 Smp_152780.1 0.92 1.17e-06 5.97e-05
Smp_018880.1 Smp_153240.1 0.96 1.19e-08 2.57e-06
Smp_154020.1 Smp_018880.1 0.96 1.32e-08 2.75e-06
Smp_154300.1 Smp_018880.1 0.92 5.60e-07 3.55e-05
Smp_154370.1 Smp_018880.1 0.96 1.40e-08 2.86e-06
Smp_155890.1 Smp_018880.1 0.94 1.21e-07 1.23e-05
Smp_018880.1 Smp_157310.1 0.98 7.59e-11 9.80e-08
Smp_018880.1 Smp_159190.1 0.92 6.30e-07 3.86e-05
Smp_162370.1 Smp_018880.1 0.90 2.98e-06 1.00e-04
Smp_166950.1 Smp_018880.1 0.91 1.62e-06 7.50e-05
Smp_168380.1 Smp_018880.1 0.91 2.22e-06 9.36e-05
Smp_169190.1 Smp_018880.1 0.96 3.00e-09 1.03e-06
Smp_178240.1 Smp_018880.1 0.95 5.40e-08 7.12e-06
Smp_018880.1 Smp_179640.1 0.96 1.36e-08 2.80e-06
Smp_018880.1 Smp_182770.1 0.92 5.60e-07 3.55e-05
Smp_018880.1 Smp_183420.1 0.96 1.36e-08 2.80e-06
Smp_018880.1 Smp_184460.1 0.91 1.81e-06 8.12e-05
Smp_184750.1 Smp_018880.1 0.96 4.81e-09 1.41e-06
Smp_185180.1 Smp_018880.1 0.92 1.07e-06 5.60e-05
Smp_185220.1 Smp_018880.1 0.95 2.71e-08 4.46e-06
Smp_185360.1 Smp_018880.1 0.95 1.55e-08 3.07e-06
Smp_018880.1 Smp_194040.1 0.94 1.89e-07 1.67e-05
Smp_194770.1 Smp_018880.1 0.94 1.51e-07 1.44e-05
Smp_018880.1 Smp_195160.1 0.96 7.92e-09 1.95e-06
Smp_197110.1 Smp_018880.1 0.91 1.82e-06 8.15e-05
Smp_202700.1 Smp_018880.1 0.92 9.49e-07 5.14e-05
Smp_204770.1 Smp_018880.1 0.91 1.37e-06 6.69e-05
Smp_205900.1 Smp_018880.1 0.94 8.00e-08 9.29e-06
Smp_205970.1 Smp_018880.1 0.90 3.43e-06 1.00e-04
Smp_018880.1 Smp_214150.1 0.95 4.36e-08 6.15e-06