Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_018720.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
Smp_018720.1 0 0.90 1.96 4.57 4.98

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018720.1 SmLINC00369-IBu 0.85 4.19e-05 7.00e-04
Smp_018720.1 SmLINC00548-IBu 0.82 1.00e-04 1.80e-03
Smp_018720.1 SmLINC01084-IBu 0.85 5.47e-05 9.00e-04
Smp_018720.1 SmLINC01122-IBu 0.91 1.57e-06 7.07e-05
Smp_018720.1 SmLINC01431-IBu 0.88 1.29e-05 3.00e-04
Smp_018720.1 SmLINC01538-IBu 0.86 2.74e-05 5.00e-04
Smp_018720.1 SmLINC01569-IBu 0.90 4.77e-06 1.00e-04
Smp_018720.1 SmLINC01733-IBu 0.93 3.61e-07 2.50e-05
Smp_018720.1 SmLINC01746-IBu 0.85 4.32e-05 7.00e-04
Smp_018720.1 SmLINC02084-IBu 0.80 3.00e-04 3.40e-03
Smp_018720.1 SmLINC02255-IBu -0.81 2.00e-04 2.60e-03
Smp_018720.1 SmLINC02546-IBu 0.80 2.00e-04 2.90e-03
Smp_018720.1 SmLINC03309-IBu 0.83 1.00e-04 1.60e-03
Smp_018720.1 SmLINC04432-IBu 0.84 7.72e-05 1.10e-03
Smp_018720.1 SmLINC04475-IBu 0.81 2.00e-04 2.40e-03
Smp_018720.1 SmLINC04478-IBu 0.88 1.23e-05 3.00e-04
Smp_018720.1 SmLINC04521-IBu 0.87 2.37e-05 4.00e-04
Smp_018720.1 SmLINC04637-IBu 0.80 3.00e-04 3.20e-03
Smp_018720.1 SmLINC06010-IBu 0.82 1.00e-04 2.00e-03
Smp_018720.1 SmLINC06024-IBu 0.82 1.00e-04 2.00e-03
Smp_018720.1 SmLINC06444-IBu 0.84 7.96e-05 1.10e-03
Smp_018720.1 SmLINC06449-IBu 0.85 5.02e-05 8.00e-04
Smp_018720.1 SmLINC06537-IBu 0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018720.1 0 0.90 1.96 4.57 4.98
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018720.1 Smp_040970.2 0.94 1.20e-07 1.22e-05
Smp_018720.1 Smp_052280.2 0.90 4.77e-06 1.00e-04
Smp_055340.2 Smp_018720.1 0.90 4.86e-06 1.00e-04
Smp_090140.1 Smp_018720.1 0.95 4.29e-08 6.09e-06
Smp_094050.1 Smp_018720.1 0.91 2.02e-06 8.75e-05