Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_018590.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_018590.1 0 0.89 1.74 -2.48 -5.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018590.1 SmLINC00372-IBu 0.94 9.58e-08 9.96e-06
Smp_018590.1 SmLINC01316-IBu 0.85 4.66e-05 8.00e-04
Smp_018590.1 SmLINC02646-IBu 0.85 5.04e-05 8.00e-04
Smp_018590.1 SmLINC04074-IBu 0.81 1.00e-04 2.20e-03
Smp_018590.1 SmLINC04430-IBu 0.87 1.55e-05 3.00e-04
Smp_018590.1 SmLINC05559-IBu 0.89 6.52e-06 1.00e-04
Smp_018590.1 SmLINC06490-IBu 0.90 4.14e-06 1.00e-04
Smp_018590.1 SmLINC06646-IBu 0.80 2.00e-04 2.80e-03
Smp_018590.1 SmLINC06700-IBu 0.92 1.06e-06 5.36e-05
Smp_018590.1 SmLINC06836-IBu 0.93 4.94e-07 3.12e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_018590.1 0 0.89 1.74 -2.48 -5.97
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018590.1 Smp_032120.1 0.95 5.16e-08 6.90e-06
Smp_018590.1 Smp_036270.3 0.95 1.78e-08 3.36e-06
Smp_018590.1 Smp_059340.3 0.90 3.29e-06 1.00e-04
Smp_063650.3 Smp_018590.1 0.93 2.34e-07 1.94e-05
Smp_103540.1 Smp_018590.1 0.90 3.21e-06 1.00e-04
Smp_018590.1 Smp_159070.3 0.92 6.64e-07 4.00e-05
Smp_018590.1 Smp_168800.1 0.94 9.07e-08 1.01e-05
Smp_200120.1 Smp_018590.1 0.95 5.36e-08 7.08e-06