Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_017290.4 Data

Correlation between Smp_017290.4 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_017290.4 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_017290.4 0 0.46 2.13 3.80 4.43

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017290.4 SmLINC00037-IBu -0.81 2.00e-04 2.50e-03
Smp_017290.4 SmLINC00133-IBu -0.80 2.00e-04 2.90e-03
Smp_017290.4 SmLINC00282-IBu -0.86 3.65e-05 6.00e-04
Smp_017290.4 SmLINC00369-IBu 0.82 1.00e-04 2.10e-03
Smp_017290.4 SmLINC00554-IBu -0.85 4.03e-05 7.00e-04
Smp_017290.4 SmLINC00556-IBu -0.87 1.64e-05 3.00e-04
Smp_017290.4 SmLINC01084-IBu 0.80 2.00e-04 2.90e-03
Smp_017290.4 SmLINC01431-IBu 0.82 1.00e-04 1.80e-03
Smp_017290.4 SmLINC01432-IBu 0.82 1.00e-04 1.90e-03
Smp_017290.4 SmLINC01637-IBu -0.81 2.00e-04 2.40e-03
Smp_017290.4 SmLINC02084-IBu 0.82 1.00e-04 2.00e-03
Smp_017290.4 SmLINC02255-IBu -0.93 1.94e-07 1.62e-05
Smp_017290.4 SmLINC02630-IBu -0.89 6.25e-06 1.00e-04
Smp_017290.4 SmLINC02657-IBu -0.92 8.84e-07 4.70e-05
Smp_017290.4 SmLINC02888-IBu -0.83 1.00e-04 1.50e-03
Smp_017290.4 SmLINC03849-IBu -0.83 1.00e-04 1.60e-03
Smp_017290.4 SmLINC03927-IBu 0.80 3.00e-04 3.30e-03
Smp_017290.4 SmLINC04421-IBu 0.83 1.00e-04 1.60e-03
Smp_017290.4 SmLINC05147-IBu 0.81 2.00e-04 2.60e-03
Smp_017290.4 SmLINC05274-IBu -0.81 2.00e-04 2.60e-03
Smp_017290.4 SmLINC05284-IBu -0.88 9.14e-06 2.00e-04
Smp_017290.4 SmLINC05720-IBu -0.82 1.00e-04 1.80e-03
Smp_017290.4 SmLINC05989-IBu -0.81 2.00e-04 2.70e-03
Smp_017290.4 SmLINC06128-IBu -0.85 4.13e-05 7.00e-04
Smp_017290.4 SmLINC06221-IBu 0.80 3.00e-04 3.10e-03
Smp_017290.4 SmLINC06535-IBu -0.92 1.18e-06 5.78e-05
Smp_017290.4 SmLINC06903-IBu -0.81 1.00e-04 2.20e-03

Correlation between Smp_017290.4 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_017290.4 0 0.46 2.13 3.80 4.43
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017290.4 Smp_035090.2 -0.93 3.84e-07 2.73e-05
Smp_017290.4 Smp_055340.2 0.93 3.85e-07 2.74e-05
Smp_017290.4 Smp_109240.1 -0.91 2.31e-06 9.63e-05