Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_017020.1 Data

Correlation between Smp_017020.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_017020.1 0 0.08 0.95 -6.58 -6.58

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017020.1 SmLINC00376-IBu -0.53 4.14e-02 9.71e-02
Smp_017020.1 SmLINC01431-IBu -0.58 2.29e-02 6.33e-02
Smp_017020.1 SmLINC04430-IBu 0.92 6.41e-07 2.62e-05

Correlation between Smp_017020.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_017020.1 0 0.08 0.95 -6.58 -6.58

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017020.1 SmLINC00372-IBu 0.84 8.49e-05 1.20e-03
Smp_017020.1 SmLINC02026-IBu 0.87 1.70e-05 3.00e-04
Smp_017020.1 SmLINC04430-IBu 0.92 6.41e-07 3.74e-05
Smp_017020.1 SmLINC05559-IBu 0.84 7.78e-05 1.10e-03
Smp_017020.1 SmLINC06490-IBu 0.87 1.80e-05 4.00e-04
Smp_017020.1 SmLINC06700-IBu 0.90 4.27e-06 1.00e-04
Smp_017020.1 SmLINC06836-IBu 0.83 1.00e-04 1.50e-03

Correlation between Smp_017020.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_017020.1 0.92 7.36e-07 4.30e-05
Smp_042090.3 Smp_017020.1 0.93 2.57e-07 2.07e-05
Smp_017020.1 Smp_062420.4 0.90 3.63e-06 1.00e-04
Smp_085110.3 Smp_017020.1 0.93 2.77e-07 2.18e-05
Smp_098890.1 Smp_017020.1 0.96 1.45e-08 2.93e-06
Smp_194060.1 Smp_017020.1 0.93 3.71e-07 2.67e-05
Smp_200120.1 Smp_017020.1 0.92 1.00e-06 5.34e-05