Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_016490.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_016490.1 0 -4.16 1.89 6.06 7.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.1 SmLINC01637-IBu -0.72 2.10e-03 1.11e-02
Smp_016490.1 SmLINC04271-IBu -0.69 3.70e-03 1.69e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_016490.1 0 -4.16 1.89 6.06 7.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.1 SmLINC00001-IBu 0.94 7.91e-08 8.73e-06
Smp_016490.1 SmLINC00004-IBu 0.90 4.19e-06 1.00e-04
Smp_016490.1 SmLINC00369-IBu 0.83 1.00e-04 1.40e-03
Smp_016490.1 SmLINC01084-IBu 0.82 1.00e-04 1.70e-03
Smp_016490.1 SmLINC01431-IBu 0.82 1.00e-04 1.80e-03
Smp_016490.1 SmLINC01432-IBu 0.80 2.00e-04 3.10e-03
Smp_016490.1 SmLINC01520-IBu 0.85 5.08e-05 8.00e-04
Smp_016490.1 SmLINC02084-IBu 0.81 2.00e-04 2.60e-03
Smp_016490.1 SmLINC02376-IBu 0.92 5.34e-07 3.29e-05
Smp_016490.1 SmLINC02394-IBu 0.90 2.57e-06 1.00e-04
Smp_016490.1 SmLINC02539-IBu 0.86 2.90e-05 5.00e-04
Smp_016490.1 SmLINC02540-IBu 0.86 3.23e-05 6.00e-04
Smp_016490.1 SmLINC02577-IBu 0.86 2.58e-05 5.00e-04
Smp_016490.1 SmLINC02630-IBu -0.80 3.00e-04 3.20e-03
Smp_016490.1 SmLINC02783-IBu 0.83 1.00e-04 1.60e-03
Smp_016490.1 SmLINC03326-IBu 0.90 3.02e-06 1.00e-04
Smp_016490.1 SmLINC03658-IBu 0.83 1.00e-04 1.50e-03
Smp_016490.1 SmLINC04235-IBu 0.87 2.21e-05 4.00e-04
Smp_016490.1 SmLINC04421-IBu 0.88 1.42e-05 3.00e-04
Smp_016490.1 SmLINC04423-IBu 0.83 1.00e-04 1.60e-03
Smp_016490.1 SmLINC04627-IBu 0.83 1.00e-04 1.40e-03
Smp_016490.1 SmLINC05289-IBu 0.90 2.69e-06 1.00e-04
Smp_016490.1 SmLINC05604-IBu 0.88 1.03e-05 2.00e-04
Smp_016490.1 SmLINC05684-IBu 0.82 1.00e-04 1.90e-03
Smp_016490.1 SmLINC06024-IBu 0.83 1.00e-04 1.50e-03
Smp_016490.1 SmLINC06145-IBu 0.89 8.78e-06 2.00e-04
Smp_016490.1 SmLINC06239-IBu 0.81 2.00e-04 2.60e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016490.1 0 -4.16 1.89 6.06 7.38
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.1 Smp_016490.2 0.92 1.09e-06 5.67e-05
Smp_016490.1 Smp_024180.1 0.92 6.47e-07 3.93e-05
Smp_024180.2 Smp_016490.1 0.94 9.84e-08 1.07e-05
Smp_016490.1 Smp_028870.1 0.93 4.45e-07 3.03e-05
Smp_033260.1 Smp_016490.1 0.90 4.46e-06 1.00e-04
Smp_050350.3 Smp_016490.1 0.90 4.61e-06 1.00e-04
Smp_083430.1 Smp_016490.1 0.90 4.57e-06 1.00e-04
Smp_016490.1 Smp_085180.1 0.92 1.02e-06 5.41e-05
Smp_016490.1 Smp_102780.1 0.92 1.13e-06 5.82e-05
Smp_016490.1 Smp_130100.1 0.90 3.85e-06 1.00e-04
Smp_016490.1 Smp_131490.1 0.94 1.93e-07 1.70e-05
Smp_016490.1 Smp_137810.1 0.90 2.81e-06 1.00e-04
Smp_016490.1 Smp_155570.1 0.94 7.01e-08 8.49e-06
Smp_016490.1 Smp_156930.1 0.91 1.35e-06 6.62e-05
Smp_159650.1 Smp_016490.1 0.92 8.58e-07 4.79e-05
Smp_016490.1 Smp_164320.1 0.92 1.06e-06 5.58e-05
Smp_016490.1 Smp_202610.1 0.94 1.33e-07 1.32e-05
Smp_016490.1 Smp_203030.1 0.91 1.45e-06 6.94e-05