Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_016200.1 Data

Correlation between Smp_016200.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_016200.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 SmLINC02039-IBu 0.91 1.49e-06 6.81e-05
Smp_016200.1 SmLINC05989-IBu 0.90 4.07e-06 1.00e-04
Smp_016200.1 SmLINC06128-IBu 0.81 2.00e-04 2.70e-03

Correlation between Smp_016200.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05670-IBu 0 -3.35 -5.02 -2.57 -4.14
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06491-IBu 0 -2.11 -3.83 -3.48 -3.52
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_044280.2 0 -10.78 -4.06 -10.78 -10.78
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_096290.2 0 -2.27 -6.00 -3.25 -2.18
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 SmLINC02039-IBu 0.91 1.49e-06 7.06e-05
Smp_016200.1 SmLINC05670-IBu 0.93 3.31e-07 2.47e-05
Smp_016200.1 SmLINC05989-IBu 0.90 4.07e-06 1.00e-04
Smp_016200.1 SmLINC06491-IBu 0.93 2.06e-07 1.77e-05
Smp_016200.1 Smp_026450.1 0.95 5.40e-08 7.12e-06
Smp_016200.1 Smp_028990.2 0.93 1.99e-07 1.73e-05
Smp_016200.1 Smp_035270.1 0.91 1.60e-06 7.43e-05
Smp_016200.1 Smp_044280.2 0.90 4.73e-06 1.00e-04
Smp_016200.1 Smp_052060.1 0.90 3.70e-06 1.00e-04
Smp_016200.1 Smp_058360.2 0.93 2.65e-07 2.11e-05
Smp_096290.2 Smp_016200.1 0.92 9.10e-07 4.99e-05
Smp_016200.1 Smp_106390.1 0.91 1.93e-06 8.51e-05
Smp_016200.1 Smp_114910.1 0.95 4.02e-08 5.83e-06
Smp_016200.1 Smp_119730.1 0.97 9.27e-10 4.85e-07
Smp_016200.1 Smp_120920.3 0.93 3.11e-07 2.36e-05
Smp_016200.1 Smp_163390.1 0.94 8.41e-08 9.61e-06
Smp_016200.1 Smp_205970.1 0.98 3.27e-12 1.37e-08