Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_015070.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_015070.2 0 4.80 5.60 1.08 -0.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015070.2 SmLINC00372-IBu 0.81 1.00e-04 2.20e-03
Smp_015070.2 SmLINC01316-IBu 0.84 6.80e-05 1.00e-03
Smp_015070.2 SmLINC02646-IBu 0.82 1.00e-04 1.70e-03
Smp_015070.2 SmLINC06646-IBu 0.94 1.46e-07 1.33e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015070.2 Smp_017650.1 0.96 5.09e-09 1.46e-06
Smp_015070.2 Smp_021340.3 0.95 1.54e-08 3.04e-06
Smp_033950.3 Smp_015070.2 0.92 9.07e-07 4.98e-05
Smp_015070.2 Smp_059340.3 0.93 2.94e-07 2.27e-05
Smp_059530.1 Smp_015070.2 0.92 6.42e-07 3.91e-05
Smp_015070.2 Smp_083380.2 0.96 1.15e-08 2.50e-06
Smp_015070.2 Smp_084940.2 0.93 5.10e-07 3.33e-05
Smp_098370.1 Smp_015070.2 0.92 8.88e-07 4.90e-05
Smp_015070.2 Smp_099160.4 0.91 1.56e-06 7.31e-05
Smp_103540.1 Smp_015070.2 0.92 1.08e-06 5.66e-05
Smp_141630.4 Smp_015070.2 0.94 1.53e-07 1.45e-05