Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_014610.1 Data

Correlation between Smp_014610.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_014610.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_014610.1 0 2.45 0.75 3.16 9.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014610.1 SmLINC06239-IBu 0.86 2.89e-05 5.00e-04

Correlation between Smp_014610.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_014610.1 0.93 2.24e-07 1.88e-05
Smp_014610.1 Smp_000410.1 0.99 2.08e-16 2.95e-11
Smp_014610.1 Smp_000420.1 0.99 3.38e-16 4.20e-11
Smp_011270.1 Smp_014610.1 0.93 2.19e-07 1.85e-05
Smp_014610.1 Smp_033250.1 0.99 1.58e-19 1.18e-13
Smp_014610.1 Smp_058160.1 0.99 4.84e-13 4.21e-09
Smp_077920.1 Smp_014610.1 0.99 1.20e-13 1.81e-09
Smp_014610.1 Smp_131110.2 0.98 1.34e-10 1.40e-07
Smp_014610.1 Smp_144440.1 0.96 3.47e-09 1.14e-06
Smp_014610.1 Smp_155310.1 0.99 9.88e-18 3.35e-12
Smp_155310.2 Smp_014610.1 0.99 1.52e-13 2.08e-09
Smp_175560.1 Smp_014610.1 0.98 6.76e-12 2.15e-08
Smp_014610.1 Smp_191910.1 0.99 6.17e-15 2.94e-10