Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_014400.3 Data

Correlation between Smp_014400.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_014400.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014400.3 SmLINC00554-IBu 0.85 4.11e-05 7.00e-04
Smp_014400.3 SmLINC00556-IBu 0.84 8.50e-05 1.20e-03
Smp_014400.3 SmLINC02255-IBu 0.84 7.28e-05 1.10e-03
Smp_014400.3 SmLINC02630-IBu 0.80 3.00e-04 3.20e-03
Smp_014400.3 SmLINC02657-IBu 0.82 1.00e-04 1.90e-03
Smp_014400.3 SmLINC02888-IBu 0.93 2.47e-07 1.92e-05
Smp_014400.3 SmLINC04957-IBu 0.81 2.00e-04 2.40e-03
Smp_014400.3 SmLINC05274-IBu 0.83 1.00e-04 1.40e-03
Smp_014400.3 SmLINC05989-IBu 0.83 9.16e-05 1.30e-03
Smp_014400.3 SmLINC06128-IBu 0.92 1.12e-06 5.56e-05
Smp_014400.3 SmLINC06903-IBu 0.90 4.51e-06 1.00e-04

Correlation between Smp_014400.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014400.3 Smp_035090.2 0.94 6.57e-08 8.12e-06
Smp_014400.3 Smp_109240.1 0.92 8.83e-07 4.89e-05
Smp_014400.3 Smp_134410.1 0.90 3.34e-06 1.00e-04
Smp_149670.1 Smp_014400.3 0.90 2.96e-06 1.00e-04