Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_014400.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014400.1 SmLINC05840-IBu 0.8 3.00e-04 2.70e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014400.1 SmLINC00001-IBu -0.81 2.00e-04 2.50e-03
Smp_014400.1 SmLINC00004-IBu -0.83 1.00e-04 1.40e-03
Smp_014400.1 SmLINC00026-IBu 0.80 3.00e-04 3.40e-03
Smp_014400.1 SmLINC00369-IBu -0.82 1.00e-04 1.80e-03
Smp_014400.1 SmLINC00525-IBu -0.81 2.00e-04 2.60e-03
Smp_014400.1 SmLINC00556-IBu 0.86 3.55e-05 6.00e-04
Smp_014400.1 SmLINC01084-IBu -0.85 5.90e-05 9.00e-04
Smp_014400.1 SmLINC01429-IBu 0.82 1.00e-04 2.10e-03
Smp_014400.1 SmLINC01431-IBu -0.85 4.36e-05 7.00e-04
Smp_014400.1 SmLINC01979-IBu 0.80 2.00e-04 3.00e-03
Smp_014400.1 SmLINC02084-IBu -0.82 1.00e-04 1.70e-03
Smp_014400.1 SmLINC02394-IBu -0.80 3.00e-04 3.40e-03
Smp_014400.1 SmLINC02546-IBu -0.80 3.00e-04 3.40e-03
Smp_014400.1 SmLINC03927-IBu -0.80 2.00e-04 3.00e-03
Smp_014400.1 SmLINC04271-IBu 0.81 1.00e-04 2.20e-03
Smp_014400.1 SmLINC04421-IBu -0.82 1.00e-04 2.10e-03
Smp_014400.1 SmLINC04521-IBu -0.80 3.00e-04 3.20e-03
Smp_014400.1 SmLINC05147-IBu -0.81 2.00e-04 2.50e-03
Smp_014400.1 SmLINC05274-IBu 0.87 2.11e-05 4.00e-04
Smp_014400.1 SmLINC05289-IBu -0.81 2.00e-04 2.50e-03
Smp_014400.1 SmLINC05604-IBu -0.82 1.00e-04 1.90e-03
Smp_014400.1 SmLINC05840-IBu 0.80 3.00e-04 3.30e-03
Smp_014400.1 SmLINC06024-IBu -0.86 3.76e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014400.1 Smp_176230.2 0.91 1.44e-06 6.93e-05