Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_013970.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_013970.1 0 1.35 2.83 3.64 5.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_013970.1 SmLINC00001-IBu 0.86 2.55e-05 5.00e-04
Smp_013970.1 SmLINC00004-IBu 0.87 1.94e-05 4.00e-04
Smp_013970.1 SmLINC01520-IBu 0.80 3.00e-04 3.20e-03
Smp_013970.1 SmLINC02029-IBu 0.85 5.35e-05 8.00e-04
Smp_013970.1 SmLINC02255-IBu -0.85 5.50e-05 9.00e-04
Smp_013970.1 SmLINC02376-IBu 0.83 1.00e-04 1.60e-03
Smp_013970.1 SmLINC02539-IBu 0.81 1.00e-04 2.30e-03
Smp_013970.1 SmLINC02577-IBu 0.81 2.00e-04 2.30e-03
Smp_013970.1 SmLINC02657-IBu -0.82 1.00e-04 1.90e-03
Smp_013970.1 SmLINC02783-IBu 0.81 2.00e-04 2.30e-03
Smp_013970.1 SmLINC04235-IBu 0.91 1.64e-06 7.30e-05
Smp_013970.1 SmLINC04421-IBu 0.80 3.00e-04 3.30e-03
Smp_013970.1 SmLINC04423-IBu 0.82 1.00e-04 1.70e-03
Smp_013970.1 SmLINC04627-IBu 0.81 1.00e-04 2.20e-03
Smp_013970.1 SmLINC05404-IBu 0.83 1.00e-04 1.50e-03
Smp_013970.1 SmLINC05604-IBu 0.83 1.00e-04 1.40e-03
Smp_013970.1 SmLINC05684-IBu 0.84 7.43e-05 1.10e-03
Smp_013970.1 SmLINC06239-IBu 0.90 2.68e-06 1.00e-04
Smp_013970.1 SmLINC06535-IBu -0.80 2.00e-04 2.80e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_013970.1 0 1.35 2.83 3.64 5.40
Smp_159650.1 0 4.04 4.18 8.26 10.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_013970.1 0.92 9.56e-07 5.17e-05
Smp_159650.1 Smp_013970.1 0.90 2.88e-06 1.00e-04