Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_013540.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_013540.1 0 0.90 0.25 0.92 6.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_013540.1 SmLINC04235-IBu 0.83 1.00e-04 1.60e-03
Smp_013540.1 SmLINC04627-IBu 0.82 1.00e-04 1.70e-03
Smp_013540.1 SmLINC06239-IBu 0.90 4.53e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_013540.1 0.96 5.45e-09 1.53e-06
Smp_000410.1 Smp_013540.1 0.99 3.62e-14 8.75e-10
Smp_000420.1 Smp_013540.1 0.99 2.40e-18 1.14e-12
Smp_011270.1 Smp_013540.1 0.91 2.31e-06 9.62e-05
Smp_033250.1 Smp_013540.1 0.99 5.51e-17 1.16e-11
Smp_058160.1 Smp_013540.1 0.98 7.33e-11 9.59e-08
Smp_077920.1 Smp_013540.1 0.99 6.99e-17 1.36e-11
Smp_130970.1 Smp_013540.1 0.93 4.37e-07 2.99e-05
Smp_131110.2 Smp_013540.1 0.98 2.60e-11 5.02e-08
Smp_144440.1 Smp_013540.1 0.98 1.68e-11 3.79e-08
Smp_155310.1 Smp_013540.1 0.99 8.93e-19 4.89e-13
Smp_155310.2 Smp_013540.1 0.98 8.92e-11 1.08e-07
Smp_175560.1 Smp_013540.1 0.99 1.39e-15 1.17e-10
Smp_191910.1 Smp_013540.1 0.99 1.86e-20 1.75e-14