Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_013440.1 Data

Correlation between Smp_013440.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_013440.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_013440.1 0 0.99 2.28 4.00 5.05

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_013440.1 SmLINC00001-IBu 0.87 1.62e-05 3.00e-04
Smp_013440.1 SmLINC00004-IBu 0.89 6.70e-06 1.00e-04
Smp_013440.1 SmLINC00007-IBu 0.82 1.00e-04 2.00e-03
Smp_013440.1 SmLINC00266-IBu 0.84 6.04e-05 9.00e-04
Smp_013440.1 SmLINC00369-IBu 0.82 1.00e-04 1.90e-03
Smp_013440.1 SmLINC00525-IBu 0.88 8.88e-06 2.00e-04
Smp_013440.1 SmLINC00633-IBu 0.81 2.00e-04 2.50e-03
Smp_013440.1 SmLINC01084-IBu 0.89 8.55e-06 2.00e-04
Smp_013440.1 SmLINC01431-IBu 0.85 4.99e-05 8.00e-04
Smp_013440.1 SmLINC01432-IBu 0.91 1.55e-06 7.03e-05
Smp_013440.1 SmLINC01520-IBu 0.87 1.57e-05 3.00e-04
Smp_013440.1 SmLINC02029-IBu 0.86 3.28e-05 6.00e-04
Smp_013440.1 SmLINC02084-IBu 0.87 2.19e-05 4.00e-04
Smp_013440.1 SmLINC02255-IBu -0.87 2.04e-05 4.00e-04
Smp_013440.1 SmLINC02376-IBu 0.80 3.00e-04 3.40e-03
Smp_013440.1 SmLINC02394-IBu 0.81 1.00e-04 2.10e-03
Smp_013440.1 SmLINC02539-IBu 0.89 7.57e-06 2.00e-04
Smp_013440.1 SmLINC02540-IBu 0.84 7.84e-05 1.10e-03
Smp_013440.1 SmLINC02545-IBu 0.91 2.45e-06 9.72e-05
Smp_013440.1 SmLINC02577-IBu 0.86 3.43e-05 6.00e-04
Smp_013440.1 SmLINC02630-IBu -0.86 3.12e-05 6.00e-04
Smp_013440.1 SmLINC02657-IBu -0.82 1.00e-04 1.80e-03
Smp_013440.1 SmLINC03658-IBu 0.85 3.95e-05 7.00e-04
Smp_013440.1 SmLINC03849-IBu -0.82 1.00e-04 2.10e-03
Smp_013440.1 SmLINC03927-IBu 0.92 8.77e-07 4.67e-05
Smp_013440.1 SmLINC04235-IBu 0.82 1.00e-04 1.70e-03
Smp_013440.1 SmLINC04421-IBu 0.95 3.48e-08 4.98e-06
Smp_013440.1 SmLINC04423-IBu 0.85 4.66e-05 8.00e-04
Smp_013440.1 SmLINC04478-IBu 0.80 3.00e-04 3.40e-03
Smp_013440.1 SmLINC04896-IBu 0.82 1.00e-04 1.80e-03
Smp_013440.1 SmLINC05274-IBu -0.82 1.00e-04 2.10e-03
Smp_013440.1 SmLINC05284-IBu -0.84 7.37e-05 1.10e-03
Smp_013440.1 SmLINC05289-IBu 0.89 6.16e-06 1.00e-04
Smp_013440.1 SmLINC05404-IBu 0.81 2.00e-04 2.40e-03
Smp_013440.1 SmLINC05604-IBu 0.95 2.83e-08 4.32e-06
Smp_013440.1 SmLINC05684-IBu 0.82 1.00e-04 1.70e-03
Smp_013440.1 SmLINC06024-IBu 0.86 2.74e-05 5.00e-04
Smp_013440.1 SmLINC06415-IBu 0.80 2.00e-04 2.90e-03
Smp_013440.1 SmLINC06535-IBu -0.83 9.38e-05 1.30e-03

Correlation between Smp_013440.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_013440.1 0 0.99 2.28 4.00 5.05
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_196830.1 0 -0.76 0.59 8.97 10.89

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 Smp_013440.1 0.90 2.62e-06 1.00e-04
Smp_013440.1 Smp_037720.1 0.91 1.66e-06 7.65e-05
Smp_050350.3 Smp_013440.1 0.91 1.29e-06 6.39e-05
Smp_013440.1 Smp_056460.1 0.92 9.61e-07 5.19e-05
Smp_013440.1 Smp_137810.1 0.91 2.00e-06 8.70e-05
Smp_013440.1 Smp_140720.1 0.92 8.94e-07 4.93e-05
Smp_013440.1 Smp_155570.1 0.90 2.69e-06 1.00e-04
Smp_013440.1 Smp_169670.1 0.90 4.60e-06 1.00e-04
Smp_013440.1 Smp_192780.1 0.91 2.12e-06 9.07e-05
Smp_013440.1 Smp_196830.1 0.90 4.50e-06 1.00e-04