Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_012010.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
Smp_012010.1 0 0.26 0.29 -5.48 -5.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_012010.1 SmLINC04074-IBu 0.85 4.12e-05 5.00e-04
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_012010.1 0 0.26 0.29 -5.48 -5.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_012010.1 SmLINC01084-IBu -0.80 2.00e-04 3.00e-03
Smp_012010.1 SmLINC01316-IBu 0.89 5.19e-06 1.00e-04
Smp_012010.1 SmLINC01431-IBu -0.80 3.00e-04 3.20e-03
Smp_012010.1 SmLINC01979-IBu 0.84 8.23e-05 1.20e-03
Smp_012010.1 SmLINC02646-IBu 0.89 8.03e-06 2.00e-04
Smp_012010.1 SmLINC03111-IBu 0.81 2.00e-04 2.30e-03
Smp_012010.1 SmLINC03395-IBu 0.81 2.00e-04 2.50e-03
Smp_012010.1 SmLINC04074-IBu 0.85 4.12e-05 7.00e-04
Smp_012010.1 SmLINC06024-IBu -0.83 1.00e-04 1.40e-03
Smp_012010.1 SmLINC06490-IBu 0.84 8.44e-05 1.20e-03
Smp_012010.1 SmLINC06646-IBu 0.95 4.18e-08 5.65e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_012010.1 Smp_059340.3 0.94 1.43e-07 1.38e-05
Smp_012010.1 Smp_168800.1 0.95 4.59e-08 6.37e-06