Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_011660.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_011660.3 0 3.68 4.23 1.47 0.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_011660.3 SmLINC01979-IBu 0.81 2.00e-04 2.40e-03
Smp_011660.3 SmLINC02646-IBu 0.87 2.24e-05 4.00e-04
Smp_011660.3 SmLINC06646-IBu 0.86 3.34e-05 6.00e-04
Smp_011660.3 SmLINC06700-IBu 0.82 1.00e-04 1.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_011660.3 0 3.68 4.23 1.47 0.71
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_011660.3 Smp_017650.1 0.9 3.95e-06 1.00e-04
Smp_062610.2 Smp_011660.3 0.9 3.63e-06 1.00e-04