Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_011660.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_011660.2 0 -0.07 -0.17 -3.53 -4.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_011660.2 SmLINC00004-IBu -0.82 1.00e-04 1.70e-03
Smp_011660.2 SmLINC00369-IBu -0.80 2.00e-04 2.90e-03
Smp_011660.2 SmLINC00525-IBu -0.80 2.00e-04 3.00e-03
Smp_011660.2 SmLINC01084-IBu -0.82 1.00e-04 1.80e-03
Smp_011660.2 SmLINC01316-IBu 0.85 4.95e-05 8.00e-04
Smp_011660.2 SmLINC01431-IBu -0.83 1.00e-04 1.40e-03
Smp_011660.2 SmLINC02084-IBu -0.80 3.00e-04 3.20e-03
Smp_011660.2 SmLINC02646-IBu 0.87 2.07e-05 4.00e-04
Smp_011660.2 SmLINC04421-IBu -0.80 2.00e-04 2.80e-03
Smp_011660.2 SmLINC05274-IBu 0.82 1.00e-04 1.80e-03
Smp_011660.2 SmLINC05289-IBu -0.80 2.00e-04 2.80e-03
Smp_011660.2 SmLINC05604-IBu -0.82 1.00e-04 2.10e-03
Smp_011660.2 SmLINC06024-IBu -0.86 3.64e-05 6.00e-04
Smp_011660.2 SmLINC06489-IBu 0.81 2.00e-04 2.40e-03
Smp_011660.2 SmLINC06490-IBu 0.87 2.30e-05 4.00e-04
Smp_011660.2 SmLINC06646-IBu 0.88 1.22e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_011660.2 0 -0.07 -0.17 -3.53 -4.85
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038870.2 Smp_011660.2 -0.90 4.47e-06 1.00e-04
Smp_168800.1 Smp_011660.2 0.93 4.12e-07 2.87e-05