Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_011270.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_011270.3 0 -0.96 1.19 -5.18 -3.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_011270.3 SmLINC00372-IBu 0.96 1.00e-08 2.13e-06
Smp_011270.3 SmLINC01316-IBu 0.88 1.31e-05 3.00e-04
Smp_011270.3 SmLINC04430-IBu 0.86 2.61e-05 5.00e-04
Smp_011270.3 SmLINC04947-IBu 0.94 1.49e-07 1.35e-05
Smp_011270.3 SmLINC05559-IBu 0.96 6.15e-09 1.54e-06
Smp_011270.3 SmLINC06700-IBu 0.82 1.00e-04 1.70e-03
Smp_011270.3 SmLINC06836-IBu 0.96 1.01e-08 2.16e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_011270.3 0 -0.96 1.19 -5.18 -3.39
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_011270.3 Smp_032120.1 0.95 1.81e-08 3.40e-06
Smp_011270.3 Smp_034840.1 0.90 3.00e-06 1.00e-04
Smp_011270.3 Smp_062070.1 0.92 1.08e-06 5.66e-05
Smp_011270.3 Smp_084940.2 0.92 9.44e-07 5.12e-05
Smp_103540.1 Smp_011270.3 0.90 2.61e-06 1.00e-04
Smp_159070.3 Smp_011270.3 0.97 1.86e-10 1.73e-07