Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_011270.1 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
Smp_000280.1 0 0.28 -3.85 1.78 7.49
Smp_000400.1 0 0.00 0.00 3.32 8.57
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000430.1 0 2.49 3.10 2.37 9.46
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_050750.1 0 0.03 1.31 3.80 9.53
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_095980.1 0 2.98 -3.66 0.39 7.55
Smp_131110.5 0 -4.13 -2.00 1.07 7.44
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_172010.1 0 1.31 -0.84 1.05 5.07
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_011270.1 SmLINC04669-IBu 0.94 7.15e-08 8.60e-06
Smp_011270.1 Smp_000280.1 0.94 1.03e-07 1.10e-05
Smp_011270.1 Smp_000400.1 0.97 1.79e-10 1.69e-07
Smp_011270.1 Smp_000410.1 0.94 8.29e-08 9.52e-06
Smp_011270.1 Smp_000420.1 0.91 2.18e-06 9.25e-05
Smp_011270.1 Smp_000430.1 0.94 6.79e-08 8.31e-06
Smp_011270.1 Smp_013540.1 0.91 2.31e-06 9.62e-05
Smp_011270.1 Smp_014610.1 0.93 2.19e-07 1.85e-05
Smp_011270.1 Smp_033250.1 0.93 3.77e-07 2.70e-05
Smp_011270.1 Smp_050270.1 0.91 1.71e-06 7.82e-05
Smp_011270.1 Smp_050750.1 0.97 1.81e-09 7.47e-07
Smp_011270.1 Smp_058160.1 0.94 9.09e-08 1.01e-05
Smp_011270.1 Smp_077900.1 0.91 1.95e-06 8.57e-05
Smp_011270.1 Smp_077920.1 0.92 1.08e-06 5.66e-05
Smp_011270.1 Smp_095980.1 0.96 2.55e-09 9.32e-07
Smp_011270.1 Smp_131110.5 0.96 2.58e-09 9.39e-07
Smp_011270.1 Smp_138570.1 0.92 5.72e-07 3.60e-05
Smp_011270.1 Smp_146480.1 0.90 2.75e-06 1.00e-04
Smp_011270.1 Smp_155310.1 0.92 6.71e-07 4.03e-05
Smp_011270.1 Smp_155310.2 0.97 1.43e-09 6.43e-07
Smp_011270.1 Smp_172010.1 0.93 4.47e-07 3.04e-05
Smp_011270.1 Smp_191910.1 0.91 1.39e-06 6.74e-05