Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_009650.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009650.2 SmLINC02039-IBu 0.85 4.57e-05 8.00e-04
Smp_009650.2 SmLINC02678-IBu 0.80 3.00e-04 3.30e-03
Smp_009650.2 SmLINC06892-IBu 0.93 3.32e-07 2.36e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_002640.1 0 -3.78 -3.97 -2.17 -4.00
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_053700.1 0 -3.20 -7.73 -2.51 -1.90
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_129190.1 0 -4.25 -6.94 -3.48 -4.65
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205190.1 0 -5.03 -3.88 -4.78 -3.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009650.2 SmLINC06892-IBu 0.93 3.32e-07 2.47e-05
Smp_002640.1 Smp_009650.2 0.92 1.06e-06 5.59e-05
Smp_005860.3 Smp_009650.2 0.90 2.70e-06 1.00e-04
Smp_009390.1 Smp_009650.2 0.94 8.32e-08 9.54e-06
Smp_022430.1 Smp_009650.2 0.90 4.86e-06 1.00e-04
Smp_036400.2 Smp_009650.2 0.95 4.14e-08 5.94e-06
Smp_038560.6 Smp_009650.2 0.97 1.33e-09 6.14e-07
Smp_042270.1 Smp_009650.2 0.99 1.33e-13 1.93e-09
Smp_009650.2 Smp_046090.1 0.99 4.68e-13 4.11e-09
Smp_053700.1 Smp_009650.2 0.90 3.36e-06 1.00e-04
Smp_059930.1 Smp_009650.2 0.97 1.02e-09 5.17e-07
Smp_061940.1 Smp_009650.2 0.92 6.98e-07 4.14e-05
Smp_066010.1 Smp_009650.2 0.92 6.56e-07 3.97e-05
Smp_084400.4 Smp_009650.2 0.90 3.70e-06 1.00e-04
Smp_105610.1 Smp_009650.2 0.96 2.57e-09 9.37e-07
Smp_113710.1 Smp_009650.2 0.97 1.68e-09 7.10e-07
Smp_129190.1 Smp_009650.2 0.90 4.82e-06 1.00e-04
Smp_009650.2 Smp_133770.1 0.92 9.41e-07 5.11e-05
Smp_148800.1 Smp_009650.2 0.97 4.54e-10 3.07e-07
Smp_149190.1 Smp_009650.2 0.97 1.77e-09 7.36e-07
Smp_009650.2 Smp_153240.1 0.92 7.44e-07 4.33e-05
Smp_154300.1 Smp_009650.2 0.92 1.03e-06 5.46e-05
Smp_178240.1 Smp_009650.2 0.95 3.44e-08 5.24e-06
Smp_184460.1 Smp_009650.2 0.92 5.64e-07 3.57e-05
Smp_185360.1 Smp_009650.2 0.91 1.42e-06 6.84e-05
Smp_009650.2 Smp_186610.1 0.95 5.10e-08 6.85e-06
Smp_190320.1 Smp_009650.2 0.92 1.17e-06 5.98e-05
Smp_009650.2 Smp_190590.1 0.95 1.58e-08 3.10e-06
Smp_192880.1 Smp_009650.2 0.95 1.61e-08 3.15e-06
Smp_202700.1 Smp_009650.2 0.90 2.85e-06 1.00e-04
Smp_205190.1 Smp_009650.2 0.96 1.32e-08 2.75e-06