Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_009320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 SmLINC02038-IBu 0.92 1.03e-06 5.27e-05
Smp_009320.1 SmLINC03769-IBu 0.91 1.98e-06 8.34e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01514-IBu 0 0.13 -4.13 -5.01 -2.59
SmLINC01834-IBu 0 0.05 -2.77 -8.44 -8.44
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC06714-IBu 0 -0.14 -3.28 -3.40 -3.90
SmLINC06717-IBu 0 0.99 -8.80 -8.80 -8.80
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_021330.1 0 0.03 -9.72 -5.60 -5.99
Smp_026160.2 0 0.93 -2.82 -7.30 -8.39
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_082430.1 0 0.56 -9.20 -5.69 -4.14
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_125140.1 0 -0.33 -4.66 -7.65 -4.46
Smp_136240.3 0 0.29 -2.67 -3.72 -4.15
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_196700.1 0 0.04 -8.78 -6.55 -6.98
Smp_203080.1 0 -0.76 -1.73 -8.70 -6.32
Smp_205780.1 0 1.12 -3.78 -8.26 -8.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 SmLINC01514-IBu 0.93 4.30e-07 2.96e-05
Smp_009320.1 SmLINC01834-IBu 0.92 9.38e-07 5.10e-05
Smp_009320.1 SmLINC02038-IBu 0.92 1.03e-06 5.48e-05
Smp_009320.1 SmLINC03769-IBu 0.91 1.98e-06 8.63e-05
Smp_009320.1 SmLINC06714-IBu 0.91 1.75e-06 7.93e-05
Smp_009320.1 SmLINC06717-IBu 0.90 3.66e-06 1.00e-04
Smp_009320.1 Smp_021330.1 0.92 1.08e-06 5.63e-05
Smp_009320.1 Smp_026160.2 0.91 1.26e-06 6.29e-05
Smp_009320.1 Smp_046800.2 0.91 1.27e-06 6.31e-05
Smp_009320.1 Smp_080920.3 0.94 8.99e-08 1.00e-05
Smp_009320.1 Smp_082430.1 0.92 9.15e-07 5.01e-05
Smp_009320.1 Smp_111320.1 0.91 2.07e-06 8.93e-05
Smp_009320.1 Smp_123000.1 0.92 7.10e-07 4.19e-05
Smp_009320.1 Smp_125140.1 0.90 3.39e-06 1.00e-04
Smp_009320.1 Smp_136240.3 0.93 3.05e-07 2.33e-05
Smp_009320.1 Smp_178400.1 0.90 3.24e-06 1.00e-04
Smp_009320.1 Smp_196700.1 0.93 4.87e-07 3.22e-05
Smp_009320.1 Smp_203080.1 0.97 1.69e-09 7.14e-07
Smp_009320.1 Smp_205780.1 0.91 2.49e-06 1.00e-04