Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_009310.1 Data

Correlation between Smp_009310.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_009310.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009310.1 SmLINC00037-IBu 0.84 7.89e-05 1.10e-03
Smp_009310.1 SmLINC00133-IBu 0.82 1.00e-04 1.70e-03
Smp_009310.1 SmLINC00282-IBu 0.89 5.22e-06 1.00e-04
Smp_009310.1 SmLINC00784-IBu 0.81 1.00e-04 2.30e-03
Smp_009310.1 SmLINC01637-IBu 0.85 4.74e-05 8.00e-04
Smp_009310.1 SmLINC02255-IBu 0.92 1.01e-06 5.17e-05
Smp_009310.1 SmLINC02630-IBu 0.90 4.44e-06 1.00e-04
Smp_009310.1 SmLINC02657-IBu 0.87 2.42e-05 5.00e-04
Smp_009310.1 SmLINC03769-IBu 0.81 2.00e-04 2.60e-03
Smp_009310.1 SmLINC03848-IBu 0.93 4.76e-07 3.03e-05
Smp_009310.1 SmLINC03930-IBu 0.83 1.00e-04 1.50e-03
Smp_009310.1 SmLINC04366-IBu 0.80 2.00e-04 3.00e-03
Smp_009310.1 SmLINC05284-IBu 0.93 2.99e-07 2.19e-05
Smp_009310.1 SmLINC05716-IBu 0.81 2.00e-04 2.50e-03
Smp_009310.1 SmLINC05720-IBu 0.86 3.76e-05 6.00e-04
Smp_009310.1 SmLINC05989-IBu 0.93 4.87e-07 3.09e-05
Smp_009310.1 SmLINC06128-IBu 0.84 7.10e-05 1.10e-03
Smp_009310.1 SmLINC06535-IBu 0.91 1.90e-06 8.12e-05
Smp_009310.1 SmLINC06903-IBu 0.83 1.00e-04 1.40e-03

Correlation between Smp_009310.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009310.1 Smp_001830.2 0.93 2.97e-07 2.29e-05
Smp_036270.4 Smp_009310.1 0.94 7.51e-08 8.90e-06
Smp_009310.1 Smp_051230.4 0.94 1.60e-07 1.49e-05
Smp_009310.1 Smp_165300.1 0.91 1.53e-06 7.21e-05
Smp_009310.1 Smp_168080.2 0.91 1.61e-06 7.49e-05
Smp_009310.1 Smp_195070.1 0.93 3.02e-07 2.31e-05