Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_009230.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_009230.1 0 1.80 -4.85 6.69 3.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009230.1 SmLINC00477-IBu 0.91 1.28e-06 6.12e-05
Smp_009230.1 SmLINC00484-IBu 0.97 1.03e-09 4.81e-07
Smp_009230.1 SmLINC00633-IBu 0.80 2.00e-04 2.90e-03
Smp_009230.1 SmLINC00769-IBu 0.86 2.61e-05 5.00e-04
Smp_009230.1 SmLINC01066-IBu 0.80 3.00e-04 3.20e-03
Smp_009230.1 SmLINC01122-IBu 0.84 7.41e-05 1.10e-03
Smp_009230.1 SmLINC01139-IBu 0.88 1.26e-05 3.00e-04
Smp_009230.1 SmLINC01433-IBu 0.85 5.30e-05 8.00e-04
Smp_009230.1 SmLINC01435-IBu 0.87 1.61e-05 3.00e-04
Smp_009230.1 SmLINC01538-IBu 0.86 3.55e-05 6.00e-04
Smp_009230.1 SmLINC01569-IBu 0.85 4.24e-05 7.00e-04
Smp_009230.1 SmLINC01733-IBu 0.82 1.00e-04 2.00e-03
Smp_009230.1 SmLINC01746-IBu 0.84 7.58e-05 1.10e-03
Smp_009230.1 SmLINC01822-IBu 0.87 1.73e-05 3.00e-04
Smp_009230.1 SmLINC03309-IBu 0.87 1.97e-05 4.00e-04
Smp_009230.1 SmLINC03542-IBu 0.94 1.91e-07 1.60e-05
Smp_009230.1 SmLINC03693-IBu 0.84 6.91e-05 1.00e-03
Smp_009230.1 SmLINC04054-IBu 0.93 4.21e-07 2.79e-05
Smp_009230.1 SmLINC04345-IBu 0.95 2.49e-08 3.96e-06
Smp_009230.1 SmLINC04475-IBu 0.82 1.00e-04 2.10e-03
Smp_009230.1 SmLINC04478-IBu 0.80 3.00e-04 3.30e-03
Smp_009230.1 SmLINC04521-IBu 0.85 4.00e-05 7.00e-04
Smp_009230.1 SmLINC04637-IBu 0.84 6.82e-05 1.00e-03
Smp_009230.1 SmLINC04663-IBu 0.94 1.48e-07 1.34e-05
Smp_009230.1 SmLINC04747-IBu 0.94 1.72e-07 1.49e-05
Smp_009230.1 SmLINC04759-IBu 0.83 1.00e-04 1.60e-03
Smp_009230.1 SmLINC04769-IBu 0.92 8.32e-07 4.50e-05
Smp_009230.1 SmLINC05009-IBu 0.86 3.71e-05 6.00e-04
Smp_009230.1 SmLINC05171-IBu 0.89 8.27e-06 2.00e-04
Smp_009230.1 SmLINC06007-IBu 0.83 9.50e-05 1.30e-03
Smp_009230.1 SmLINC06010-IBu 0.85 5.29e-05 8.00e-04
Smp_009230.1 SmLINC06221-IBu 0.86 3.10e-05 6.00e-04
Smp_009230.1 SmLINC06418-IBu 0.80 2.00e-04 2.80e-03
Smp_009230.1 SmLINC06444-IBu 0.89 5.67e-06 1.00e-04
Smp_009230.1 SmLINC06449-IBu 0.87 1.54e-05 3.00e-04
Smp_009230.1 SmLINC06536-IBu 0.80 2.00e-04 3.00e-03
Smp_009230.1 SmLINC06537-IBu 0.93 2.57e-07 1.97e-05
Smp_009230.1 SmLINC06538-IBu 0.84 7.63e-05 1.10e-03
Smp_009230.1 SmLINC06543-IBu 0.86 3.70e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_009230.1 0 1.80 -4.85 6.69 3.28
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009230.1 Smp_005470.1 0.96 2.58e-09 9.39e-07
Smp_014780.1 Smp_009230.1 0.93 4.25e-07 2.93e-05
Smp_009230.1 Smp_017610.1 0.92 5.30e-07 3.42e-05
Smp_058140.3 Smp_009230.1 0.92 1.19e-06 6.03e-05
Smp_081920.1 Smp_009230.1 0.94 8.29e-08 9.51e-06
Smp_009230.1 Smp_082580.1 0.94 1.86e-07 1.65e-05
Smp_009230.1 Smp_084270.1 0.91 2.14e-06 9.14e-05
Smp_009230.1 Smp_105730.1 0.96 7.46e-09 1.88e-06
Smp_118560.1 Smp_009230.1 0.93 3.52e-07 2.57e-05
Smp_009230.1 Smp_125210.1 0.90 2.86e-06 1.00e-04
Smp_009230.1 Smp_128510.1 0.91 2.41e-06 9.92e-05
Smp_009230.1 Smp_131840.1 0.97 2.44e-10 2.06e-07
Smp_009230.1 Smp_134960.1 0.91 1.48e-06 7.05e-05
Smp_009230.1 Smp_154180.1 0.98 3.50e-11 6.02e-08
Smp_154190.1 Smp_009230.1 0.95 3.68e-08 5.49e-06
Smp_160360.1 Smp_009230.1 0.94 1.08e-07 1.14e-05
Smp_009230.1 Smp_164550.1 0.92 9.22e-07 5.04e-05
Smp_009230.1 Smp_172520.1 0.97 1.51e-09 6.65e-07
Smp_009230.1 Smp_175020.1 0.90 2.55e-06 1.00e-04
Smp_009230.1 Smp_194960.1 0.94 1.47e-07 1.41e-05
Smp_009230.1 Smp_194970.1 0.95 5.46e-08 7.17e-06
Smp_194980.1 Smp_009230.1 0.94 6.80e-08 8.32e-06
Smp_197400.1 Smp_009230.1 0.96 2.62e-09 9.50e-07