Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_008910.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_008910.1 0 -1.29 0.24 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_008910.1 SmLINC00372-IBu 0.91 1.70e-06 7.49e-05
Smp_008910.1 SmLINC01316-IBu 0.84 8.13e-05 1.20e-03
Smp_008910.1 SmLINC02646-IBu 0.84 8.75e-05 1.20e-03
Smp_008910.1 SmLINC04430-IBu 0.91 1.96e-06 8.29e-05
Smp_008910.1 SmLINC05559-IBu 0.92 8.33e-07 4.50e-05
Smp_008910.1 SmLINC06490-IBu 0.80 3.00e-04 3.40e-03
Smp_008910.1 SmLINC06700-IBu 0.96 4.50e-09 1.25e-06
Smp_008910.1 SmLINC06836-IBu 0.94 1.62e-07 1.43e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_008910.1 0 -1.29 0.24 -6.54 -6.54
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_063650.3 0 8.82 10.72 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_008910.1 0.91 2.51e-06 1.00e-04
Smp_008910.1 Smp_032120.1 0.94 1.11e-07 1.16e-05
Smp_008910.1 Smp_036270.3 0.91 2.00e-06 8.70e-05
Smp_008910.1 Smp_062420.4 0.90 4.37e-06 1.00e-04
Smp_063650.3 Smp_008910.1 0.97 4.50e-10 3.05e-07