Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_008440.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_008440.1 0 -0.09 -2.67 1.92 3.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_008440.1 SmLINC00001-IBu 0.88 9.92e-06 2.00e-04
Smp_008440.1 SmLINC00004-IBu 0.88 9.93e-06 2.00e-04
Smp_008440.1 SmLINC00369-IBu 0.83 1.00e-04 1.60e-03
Smp_008440.1 SmLINC00525-IBu 0.81 2.00e-04 2.40e-03
Smp_008440.1 SmLINC01084-IBu 0.83 1.00e-04 1.40e-03
Smp_008440.1 SmLINC01316-IBu -0.80 3.00e-04 3.30e-03
Smp_008440.1 SmLINC01431-IBu 0.85 5.52e-05 9.00e-04
Smp_008440.1 SmLINC02376-IBu 0.83 1.00e-04 1.50e-03
Smp_008440.1 SmLINC02394-IBu 0.86 3.30e-05 6.00e-04
Smp_008440.1 SmLINC04235-IBu 0.82 1.00e-04 1.80e-03
Smp_008440.1 SmLINC04421-IBu 0.85 4.78e-05 8.00e-04
Smp_008440.1 SmLINC04423-IBu 0.88 1.47e-05 3.00e-04
Smp_008440.1 SmLINC04478-IBu 0.82 1.00e-04 1.70e-03
Smp_008440.1 SmLINC04521-IBu 0.84 8.45e-05 1.20e-03
Smp_008440.1 SmLINC05289-IBu 0.85 3.96e-05 7.00e-04
Smp_008440.1 SmLINC05604-IBu 0.84 7.78e-05 1.10e-03
Smp_008440.1 SmLINC06024-IBu 0.86 3.78e-05 6.00e-04
Smp_008440.1 SmLINC06145-IBu 0.90 2.58e-06 1.00e-04
Smp_008440.1 SmLINC06490-IBu -0.84 6.55e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_008440.1 0 -0.09 -2.67 1.92 3.00
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_201910.1 0 3.92 4.88 11.60 12.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_008440.1 Smp_024180.1 0.97 1.76e-09 7.33e-07
Smp_024180.2 Smp_008440.1 0.96 3.36e-09 1.11e-06
Smp_033260.1 Smp_008440.1 0.91 2.10e-06 9.00e-05
Smp_038870.2 Smp_008440.1 0.90 2.52e-06 1.00e-04
Smp_050350.3 Smp_008440.1 0.90 4.51e-06 1.00e-04
Smp_008440.1 Smp_079420.1 0.90 4.16e-06 1.00e-04
Smp_008440.1 Smp_094050.1 0.91 1.65e-06 7.59e-05
Smp_008440.1 Smp_156930.1 0.90 4.77e-06 1.00e-04
Smp_008440.1 Smp_201910.1 0.92 7.79e-07 4.47e-05