Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_007550.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
Smp_007550.1 0 0.03 3.98 3.90 4.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007550.1 SmLINC06221-IBu 0.53 3.88e-02 9.27e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_007550.1 0 0.03 3.98 3.90 4.57

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007550.1 SmLINC00554-IBu -0.92 9.96e-07 5.12e-05
Smp_007550.1 SmLINC00556-IBu -0.84 8.52e-05 1.20e-03
Smp_007550.1 SmLINC02657-IBu -0.80 2.00e-04 2.90e-03
Smp_007550.1 SmLINC02888-IBu -0.80 2.00e-04 2.90e-03
Smp_007550.1 SmLINC06903-IBu -0.80 3.00e-04 3.20e-03