Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_007270.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007270.2 SmLINC06890-IBu 0.83 9.63e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000330.1 Smp_007270.2 0.90 2.88e-06 1.00e-04
Smp_009310.4 Smp_007270.2 0.92 7.49e-07 4.35e-05
Smp_014670.1 Smp_007270.2 0.91 2.17e-06 9.23e-05
Smp_043670.2 Smp_007270.2 0.93 2.95e-07 2.28e-05
Smp_062720.2 Smp_007270.2 0.92 6.46e-07 3.92e-05
Smp_140270.1 Smp_007270.2 0.90 3.61e-06 1.00e-04
Smp_183020.13 Smp_007270.2 0.92 8.09e-07 4.59e-05
Smp_007270.2 Smp_186130.1 0.91 2.49e-06 1.00e-04
Smp_205550.1 Smp_007270.2 0.94 1.14e-07 1.18e-05