Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_006960.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006960.1 SmLINC00026-IBu 0.84 7.72e-05 1.10e-03
Smp_006960.1 SmLINC00037-IBu 0.95 4.71e-08 6.13e-06
Smp_006960.1 SmLINC00133-IBu 0.95 5.14e-08 6.50e-06
Smp_006960.1 SmLINC00282-IBu 0.94 1.66e-07 1.45e-05
Smp_006960.1 SmLINC00294-IBu 0.94 8.05e-08 8.84e-06
Smp_006960.1 SmLINC00893-IBu 0.88 1.42e-05 3.00e-04
Smp_006960.1 SmLINC01084-IBu -0.81 2.00e-04 2.50e-03
Smp_006960.1 SmLINC01462-IBu 0.92 1.07e-06 5.39e-05
Smp_006960.1 SmLINC01486-IBu 0.95 2.50e-08 3.97e-06
Smp_006960.1 SmLINC01637-IBu 0.93 2.36e-07 1.86e-05
Smp_006960.1 SmLINC02255-IBu 0.87 1.54e-05 3.00e-04
Smp_006960.1 SmLINC02630-IBu 0.87 1.72e-05 3.00e-04
Smp_006960.1 SmLINC02657-IBu 0.83 9.45e-05 1.30e-03
Smp_006960.1 SmLINC03056-IBu 0.85 4.09e-05 7.00e-04
Smp_006960.1 SmLINC03362-IBu 0.80 2.00e-04 3.00e-03
Smp_006960.1 SmLINC03848-IBu 0.85 5.09e-05 8.00e-04
Smp_006960.1 SmLINC03849-IBu 0.90 4.47e-06 1.00e-04
Smp_006960.1 SmLINC03930-IBu 0.93 2.15e-07 1.74e-05
Smp_006960.1 SmLINC04075-IBu 0.92 6.65e-07 3.84e-05
Smp_006960.1 SmLINC04106-IBu 0.81 2.00e-04 2.60e-03
Smp_006960.1 SmLINC04178-IBu 0.80 3.00e-04 3.20e-03
Smp_006960.1 SmLINC04271-IBu 0.88 1.30e-05 3.00e-04
Smp_006960.1 SmLINC04366-IBu 0.88 1.02e-05 2.00e-04
Smp_006960.1 SmLINC04421-IBu -0.80 2.00e-04 3.00e-03
Smp_006960.1 SmLINC05284-IBu 0.90 3.62e-06 1.00e-04
Smp_006960.1 SmLINC05716-IBu 0.93 2.64e-07 2.01e-05
Smp_006960.1 SmLINC05720-IBu 0.90 4.60e-06 1.00e-04
Smp_006960.1 SmLINC05887-IBu 0.81 2.00e-04 2.70e-03
Smp_006960.1 SmLINC06024-IBu -0.81 2.00e-04 2.40e-03
Smp_006960.1 SmLINC06535-IBu 0.95 3.31e-08 4.81e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_006960.1 0.92 8.33e-07 4.69e-05
Smp_006960.1 Smp_035200.3 0.90 4.18e-06 1.00e-04
Smp_036270.4 Smp_006960.1 0.93 2.77e-07 2.18e-05
Smp_111640.1 Smp_006960.1 0.90 2.96e-06 1.00e-04
Smp_125070.1 Smp_006960.1 0.90 2.53e-06 1.00e-04
Smp_160230.1 Smp_006960.1 0.92 5.78e-07 3.63e-05
Smp_184710.1 Smp_006960.1 0.93 4.50e-07 3.05e-05
Smp_204360.1 Smp_006960.1 0.92 1.05e-06 5.55e-05
Smp_205330.1 Smp_006960.1 0.92 1.12e-06 5.79e-05