Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_006830.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_006830.2 0 -0.57 2.34 -5.80 -4.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006830.2 SmLINC00372-IBu 0.95 4.80e-08 6.20e-06
Smp_006830.2 SmLINC01316-IBu 0.81 1.00e-04 2.20e-03
Smp_006830.2 SmLINC04430-IBu 0.85 5.76e-05 9.00e-04
Smp_006830.2 SmLINC04947-IBu 0.97 3.90e-10 2.57e-07
Smp_006830.2 SmLINC05559-IBu 0.96 5.31e-09 1.40e-06
Smp_006830.2 SmLINC06700-IBu 0.80 3.00e-04 3.10e-03
Smp_006830.2 SmLINC06836-IBu 0.96 4.93e-09 1.33e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_006830.2 0 -0.57 2.34 -5.80 -4.64
Smp_021920.1 0 0.33 1.47 -5.43 -11.17
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006830.2 Smp_021920.1 0.91 2.35e-06 9.74e-05
Smp_006830.2 Smp_032120.1 0.92 9.16e-07 5.01e-05
Smp_006830.2 Smp_034840.1 0.91 2.24e-06 9.43e-05
Smp_006830.2 Smp_084940.2 0.90 4.44e-06 1.00e-04
Smp_006830.2 Smp_159070.3 0.96 1.23e-08 2.63e-06