Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_006830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_006830.1 0 -0.91 -12.50 -0.79 -0.49

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006830.1 SmLINC00372-IBu -0.86 3.35e-05 6.00e-04
Smp_006830.1 SmLINC04430-IBu -0.87 1.59e-05 3.00e-04
Smp_006830.1 SmLINC04947-IBu -0.81 2.00e-04 2.40e-03
Smp_006830.1 SmLINC05559-IBu -0.89 6.51e-06 1.00e-04
Smp_006830.1 SmLINC06700-IBu -0.83 1.00e-04 1.60e-03
Smp_006830.1 SmLINC06836-IBu -0.88 9.26e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_006830.1 0 -0.91 -12.50 -0.79 -0.49
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_126220.1 0 1.80 5.25 1.87 4.04
Smp_152540.1 0 3.53 6.32 3.87 4.18
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_212600.1 0 2.41 4.90 2.41 2.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_019940.5 Smp_006830.1 -0.91 1.61e-06 7.46e-05
Smp_029940.1 Smp_006830.1 -0.90 4.16e-06 1.00e-04
Smp_126220.1 Smp_006830.1 -0.90 2.69e-06 1.00e-04
Smp_152540.1 Smp_006830.1 -0.90 4.85e-06 1.00e-04
Smp_175300.1 Smp_006830.1 -0.90 3.56e-06 1.00e-04
Smp_212600.1 Smp_006830.1 -0.91 1.60e-06 7.45e-05