Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_006560.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006560.1 SmLINC02039-IBu 0.87 2.23e-05 4.00e-04
Smp_006560.1 SmLINC02678-IBu 0.91 1.59e-06 7.15e-05
Smp_006560.1 SmLINC02888-IBu 0.87 1.78e-05 4.00e-04
Smp_006560.1 SmLINC06128-IBu 0.90 2.73e-06 1.00e-04
Smp_006560.1 SmLINC06892-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006560.1 Smp_018880.1 0.97 3.43e-10 2.57e-07
Smp_006560.1 Smp_071380.2 0.93 2.22e-07 1.87e-05
Smp_006560.1 Smp_085290.3 0.91 2.09e-06 8.97e-05
Smp_102670.1 Smp_006560.1 0.99 8.40e-13 5.94e-09
Smp_106390.1 Smp_006560.1 0.93 2.08e-07 1.79e-05
Smp_006560.1 Smp_133770.1 0.99 1.20e-14 4.43e-10
Smp_134410.1 Smp_006560.1 0.93 2.75e-07 2.17e-05
Smp_149670.1 Smp_006560.1 0.92 1.15e-06 5.90e-05
Smp_006560.1 Smp_152780.1 0.90 4.59e-06 1.00e-04
Smp_006560.1 Smp_153240.1 0.99 1.45e-14 4.96e-10
Smp_006560.1 Smp_169190.1 0.98 6.33e-11 8.74e-08
Smp_006560.1 Smp_178240.1 0.98 6.79e-11 9.14e-08
Smp_006560.1 Smp_184460.1 0.92 9.22e-07 5.04e-05
Smp_006560.1 Smp_185360.1 0.96 1.31e-08 2.74e-06
Smp_206150.1 Smp_006560.1 0.90 4.68e-06 1.00e-04