Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_005860.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005860.3 SmLINC02678-IBu 0.81 2.00e-04 2.40e-03
Smp_005860.3 SmLINC02888-IBu 0.82 1.00e-04 2.00e-03
Smp_005860.3 SmLINC06128-IBu 0.85 4.98e-05 8.00e-04
Smp_005860.3 SmLINC06892-IBu 0.94 7.13e-08 8.14e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005860.3 Smp_009650.2 0.90 2.70e-06 1.00e-04
Smp_032990.1 Smp_005860.3 0.93 2.15e-07 1.83e-05
Smp_036400.2 Smp_005860.3 0.94 1.51e-07 1.44e-05
Smp_065580.1 Smp_005860.3 0.95 1.85e-08 3.45e-06
Smp_066010.1 Smp_005860.3 0.94 1.69e-07 1.55e-05
Smp_005860.3 Smp_085290.3 0.94 1.88e-07 1.67e-05
Smp_102670.1 Smp_005860.3 0.91 2.36e-06 9.78e-05
Smp_106390.1 Smp_005860.3 0.93 2.35e-07 1.95e-05
Smp_005860.3 Smp_133770.1 0.91 2.15e-06 9.16e-05
Smp_140680.2 Smp_005860.3 0.92 1.06e-06 5.57e-05
Smp_145810.2 Smp_005860.3 0.92 5.68e-07 3.59e-05
Smp_150690.2 Smp_005860.3 0.94 1.38e-07 1.35e-05
Smp_005860.3 Smp_153240.1 0.90 3.38e-06 1.00e-04
Smp_178240.1 Smp_005860.3 0.93 3.29e-07 2.46e-05
Smp_005860.3 Smp_184460.1 0.99 1.98e-14 6.01e-10
Smp_185360.1 Smp_005860.3 0.97 5.69e-10 3.55e-07
Smp_188900.1 Smp_005860.3 0.92 6.68e-07 4.02e-05
Smp_202140.1 Smp_005860.3 0.94 7.64e-08 9.00e-06
Smp_206150.1 Smp_005860.3 0.97 6.45e-10 3.84e-07