Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_004810.4 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_004810.4 0 0.00 0.00 8.49 7.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004810.4 SmLINC00171-IBu 0.84 7.99e-05 1.20e-03
Smp_004810.4 SmLINC00369-IBu 0.83 9.94e-05 1.40e-03
Smp_004810.4 SmLINC00477-IBu 0.83 9.25e-05 1.30e-03
Smp_004810.4 SmLINC01066-IBu 0.82 1.00e-04 1.80e-03
Smp_004810.4 SmLINC01433-IBu 0.90 4.00e-06 1.00e-04
Smp_004810.4 SmLINC01435-IBu 0.83 1.00e-04 1.60e-03
Smp_004810.4 SmLINC01822-IBu 0.87 2.12e-05 4.00e-04
Smp_004810.4 SmLINC02084-IBu 0.80 3.00e-04 3.40e-03
Smp_004810.4 SmLINC03108-IBu 0.84 8.45e-05 1.20e-03
Smp_004810.4 SmLINC03542-IBu 0.87 2.21e-05 4.00e-04
Smp_004810.4 SmLINC03693-IBu 0.82 1.00e-04 2.00e-03
Smp_004810.4 SmLINC04759-IBu 0.88 1.19e-05 3.00e-04
Smp_004810.4 SmLINC05258-IBu 0.83 1.00e-04 1.60e-03
Smp_004810.4 SmLINC06007-IBu 0.85 4.71e-05 8.00e-04
Smp_004810.4 SmLINC06221-IBu 0.83 9.25e-05 1.30e-03
Smp_004810.4 SmLINC06418-IBu 0.81 2.00e-04 2.50e-03
Smp_004810.4 SmLINC06538-IBu 0.86 2.78e-05 5.00e-04
Smp_004810.4 SmLINC06543-IBu 0.87 1.99e-05 4.00e-04