Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_004780.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
Smp_004780.3 0 8.47 8.56 12.10 13.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC00001-IBu 0.92 8.73e-07 4.66e-05
Smp_004780.3 SmLINC00004-IBu 0.95 2.16e-08 3.60e-06
Smp_004780.3 SmLINC00007-IBu 0.82 1.00e-04 2.00e-03
Smp_004780.3 SmLINC00525-IBu 0.84 6.86e-05 1.00e-03
Smp_004780.3 SmLINC01084-IBu 0.84 6.45e-05 1.00e-03
Smp_004780.3 SmLINC01431-IBu 0.83 1.00e-04 1.60e-03
Smp_004780.3 SmLINC01520-IBu 0.83 1.00e-04 1.50e-03
Smp_004780.3 SmLINC02029-IBu 0.89 5.80e-06 1.00e-04
Smp_004780.3 SmLINC02376-IBu 0.81 2.00e-04 2.60e-03
Smp_004780.3 SmLINC02394-IBu 0.85 4.20e-05 7.00e-04
Smp_004780.3 SmLINC02539-IBu 0.88 1.14e-05 2.00e-04
Smp_004780.3 SmLINC02545-IBu 0.80 3.00e-04 3.40e-03
Smp_004780.3 SmLINC02577-IBu 0.86 3.57e-05 6.00e-04
Smp_004780.3 SmLINC02783-IBu 0.83 1.00e-04 1.60e-03
Smp_004780.3 SmLINC03326-IBu 0.84 6.02e-05 9.00e-04
Smp_004780.3 SmLINC04235-IBu 0.93 4.76e-07 3.04e-05
Smp_004780.3 SmLINC04421-IBu 0.85 4.49e-05 7.00e-04
Smp_004780.3 SmLINC04423-IBu 0.91 1.92e-06 8.16e-05
Smp_004780.3 SmLINC04627-IBu 0.83 9.65e-05 1.30e-03
Smp_004780.3 SmLINC05289-IBu 0.85 5.33e-05 8.00e-04
Smp_004780.3 SmLINC05404-IBu 0.84 6.65e-05 1.00e-03
Smp_004780.3 SmLINC05604-IBu 0.88 1.45e-05 3.00e-04
Smp_004780.3 SmLINC05684-IBu 0.86 2.76e-05 5.00e-04
Smp_004780.3 SmLINC06024-IBu 0.88 9.74e-06 2.00e-04
Smp_004780.3 SmLINC06239-IBu 0.87 1.62e-05 3.00e-04
Smp_004780.3 SmLINC06415-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00163-IBu 0 -4.50 -0.66 3.09 4.09
SmLINC00958-IBu 0 -4.78 -4.78 2.29 4.18
SmLINC01430-IBu 0 0.00 3.17 6.17 7.68
SmLINC01461-IBu 0 -0.51 -1.70 3.51 4.54
SmLINC01901-IBu 0 3.10 4.64 9.27 11.57
SmLINC02319-IBu 0 4.17 4.55 7.67 9.10
SmLINC02551-IBu 0 -0.21 1.64 4.04 5.37
SmLINC03189-IBu 0 3.00 4.99 7.05 8.85
SmLINC03433-IBu 0 -0.55 -0.75 2.24 3.56
SmLINC03456-IBu 0 0.00 4.46 7.74 9.08
SmLINC03607-IBu 0 0.00 0.00 6.53 7.93
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04379-IBu 0 0.00 0.00 8.78 9.99
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC05597-IBu 0 2.91 5.28 9.08 10.90
SmLINC06797-IBu 0 0.00 0.00 7.22 9.62
SmLINC06933-IBu 0 0.37 0.86 4.55 5.92
Smp_000610.1 0 2.19 3.45 4.76 5.87
Smp_002600.1 0 0.21 -0.30 3.90 5.91
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_006760.1 0 -0.29 -0.16 5.39 6.71
Smp_008610.1 0 0.90 0.48 3.97 5.94
Smp_009430.1 0 1.03 1.34 3.35 4.60
Smp_011270.2 0 0.63 0.99 3.38 4.92
Smp_013970.1 0 1.35 2.83 3.64 5.40
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_019030.1 0 0.28 1.27 4.20 6.33
Smp_020080.1 0 0.30 1.96 4.11 6.09
Smp_026030.1 0 1.18 2.09 2.92 4.68
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_030180.1 0 -0.12 -1.47 3.03 3.99
Smp_035560.2 0 1.38 0.07 5.03 6.59
Smp_037530.1 0 -0.36 -0.67 3.45 4.52
Smp_042700.1 0 0.66 2.47 6.32 7.17
Smp_043260.1 0 1.35 2.95 4.58 5.95
Smp_043390.1 0 0.68 0.51 4.04 6.00
Smp_048930.1 0 0.20 0.76 3.10 4.09
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051060.1 0 2.21 3.48 5.78 6.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_053900.1 0 -0.18 -0.54 4.48 5.69
Smp_054770.1 0 0.16 1.73 2.55 4.45
Smp_063530.1 0 0.94 3.38 8.24 9.42
Smp_063530.2 0 -0.21 0.31 5.10 6.63
Smp_067090.1 0 0.53 -0.10 2.99 4.15
Smp_071610.1 0 0.17 0.43 2.66 4.14
Smp_074160.1 0 0.61 0.45 5.32 6.17
Smp_074230.1 0 -0.19 0.08 3.18 4.07
Smp_074390.1 0 0.42 2.20 4.70 6.33
Smp_074430.1 0 1.63 2.83 4.67 6.66
Smp_077610.1 0 0.94 0.79 7.02 9.19
Smp_079770.2 0 -0.10 3.03 4.81 6.51
Smp_081900.2 0 1.97 2.83 5.94 6.91
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_086470.1 0 -0.47 0.55 4.74 6.73
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_104270.1 0 1.02 1.31 4.91 6.99
Smp_119910.1 0 0.30 1.25 3.12 4.39
Smp_121930.1 0 1.51 3.52 6.68 9.02
Smp_121930.2 0 1.74 1.71 6.11 8.12
Smp_122500.1 0 0.84 0.19 4.69 6.25
Smp_123240.1 0 -2.26 -1.40 1.18 2.57
Smp_124380.1 0 -1.83 0.32 5.50 6.96
Smp_126120.1 0 1.33 3.37 6.74 8.20
Smp_127990.1 0 0.05 -4.79 3.53 5.53
Smp_128160.1 0 0.17 1.21 1.97 4.65
Smp_130090.1 0 -0.64 -0.05 2.27 3.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131470.1 0 1.65 1.80 6.38 8.19
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_131500.1 0 1.11 1.77 4.12 6.64
Smp_136620.1 0 -0.33 -3.32 5.55 6.76
Smp_136700.1 0 -0.70 -1.05 4.06 5.24
Smp_136760.1 0 0.06 -2.04 5.33 6.63
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_145510.1 0 -0.40 2.08 3.15 4.60
Smp_153360.1 0 -2.73 -2.73 4.39 6.61
Smp_153630.1 0 0.09 0.70 5.26 7.09
Smp_155110.1 0 0.00 0.00 6.87 8.46
Smp_157400.1 0 1.10 1.07 3.19 4.71
Smp_158520.1 0 1.70 1.60 6.53 8.66
Smp_158620.1 0 -0.19 -0.50 3.70 5.00
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_161240.1 0 -2.05 -1.46 3.78 5.30
Smp_161820.1 0 -0.36 -0.21 2.51 3.56
Smp_162770.1 0 1.21 1.20 4.18 6.29
Smp_164040.1 0 0.77 2.16 4.05 6.32
Smp_166530.2 0 0.42 1.56 5.78 7.62
Smp_166800.1 0 -0.50 0.17 2.51 4.03
Smp_168400.1 0 0.16 1.41 3.50 5.21
Smp_172590.1 0 1.26 1.98 6.38 8.16
Smp_172610.1 0 0.44 1.78 3.40 5.16
Smp_179170.1 0 1.52 0.09 6.08 8.60
Smp_180500.1 0 -1.30 -2.77 1.08 2.37
Smp_180930.1 0 0.47 -1.94 2.04 3.34
Smp_181390.1 0 -0.28 0.93 2.24 4.62
Smp_191400.1 0 0.86 -0.03 3.58 5.59
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194840.1 0 1.29 1.90 5.62 8.30
Smp_199160.1 0 -0.45 -0.27 2.02 3.64
Smp_199550.1 0 -1.26 0.39 2.44 4.04
Smp_201100.1 0 -0.37 -1.01 2.37 3.82
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_203170.1 0 0.43 -2.95 3.21 4.50
Smp_204810.1 0 0.92 3.78 7.51 9.44
Smp_204880.1 0 -0.92 -0.62 2.74 4.24
Smp_209060.1 0 0.56 0.29 3.49 5.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC00001-IBu 0.92 8.73e-07 4.85e-05
Smp_004780.3 SmLINC00004-IBu 0.95 2.16e-08 3.83e-06
Smp_004780.3 SmLINC00163-IBu 0.92 1.08e-06 5.66e-05
Smp_004780.3 SmLINC00958-IBu 0.95 4.58e-08 6.37e-06
Smp_004780.3 SmLINC01430-IBu 0.95 5.63e-08 7.32e-06
Smp_004780.3 SmLINC01461-IBu 0.92 8.49e-07 4.75e-05
Smp_004780.3 SmLINC01901-IBu 0.90 2.92e-06 1.00e-04
Smp_004780.3 SmLINC02319-IBu 0.90 3.87e-06 1.00e-04
Smp_004780.3 SmLINC02551-IBu 0.95 2.53e-08 4.25e-06
Smp_004780.3 SmLINC03189-IBu 0.93 4.17e-07 2.90e-05
Smp_004780.3 SmLINC03433-IBu 0.95 1.63e-08 3.17e-06
Smp_004780.3 SmLINC03456-IBu 0.96 1.21e-08 2.59e-06
Smp_004780.3 SmLINC03607-IBu 0.91 1.26e-06 6.29e-05
Smp_004780.3 SmLINC04235-IBu 0.93 4.76e-07 3.17e-05
Smp_004780.3 SmLINC04379-IBu 0.91 2.15e-06 9.16e-05
Smp_004780.3 SmLINC04423-IBu 0.91 1.92e-06 8.45e-05
Smp_004780.3 SmLINC05597-IBu 0.94 1.11e-07 1.16e-05
Smp_004780.3 SmLINC06797-IBu 0.92 9.94e-07 5.31e-05
Smp_004780.3 SmLINC06933-IBu 0.95 3.38e-08 5.19e-06
Smp_004780.3 Smp_000610.1 0.91 1.70e-06 7.77e-05
Smp_002600.1 Smp_004780.3 0.92 9.58e-07 5.17e-05
Smp_004780.3 Smp_006760.1 0.91 1.53e-06 7.23e-05
Smp_004780.3 Smp_008610.1 0.90 2.51e-06 1.00e-04
Smp_004780.3 Smp_009430.1 0.91 1.47e-06 7.00e-05
Smp_004780.3 Smp_011270.2 0.90 4.53e-06 1.00e-04
Smp_004780.3 Smp_013970.1 0.92 9.56e-07 5.17e-05
Smp_004780.3 Smp_016490.2 0.90 2.67e-06 1.00e-04
Smp_004780.3 Smp_019030.1 0.90 3.05e-06 1.00e-04
Smp_004780.3 Smp_020080.1 0.90 3.25e-06 1.00e-04
Smp_004780.3 Smp_026030.1 0.92 1.16e-06 5.93e-05
Smp_004780.3 Smp_028870.1 0.91 2.32e-06 9.66e-05
Smp_004780.3 Smp_030180.1 0.90 3.46e-06 1.00e-04
Smp_004780.3 Smp_035560.2 0.90 4.45e-06 1.00e-04
Smp_004780.3 Smp_037530.1 0.92 6.37e-07 3.89e-05
Smp_004780.3 Smp_042700.1 0.92 5.98e-07 3.72e-05
Smp_004780.3 Smp_043260.1 0.93 2.92e-07 2.26e-05
Smp_004780.3 Smp_043390.1 0.92 5.36e-07 3.45e-05
Smp_004780.3 Smp_048930.1 0.90 2.53e-06 1.00e-04
Smp_050350.3 Smp_004780.3 0.93 4.60e-07 3.10e-05
Smp_004780.3 Smp_051060.1 0.90 4.40e-06 1.00e-04
Smp_004780.3 Smp_052280.2 0.90 3.17e-06 1.00e-04
Smp_004780.3 Smp_053900.1 0.90 3.77e-06 1.00e-04
Smp_004780.3 Smp_054770.1 0.91 1.43e-06 6.87e-05
Smp_004780.3 Smp_063530.1 0.91 2.27e-06 9.52e-05
Smp_004780.3 Smp_063530.2 0.91 2.36e-06 9.79e-05
Smp_004780.3 Smp_067090.1 0.94 1.52e-07 1.44e-05
Smp_004780.3 Smp_071610.1 0.92 9.58e-07 5.17e-05
Smp_004780.3 Smp_074160.1 0.94 1.85e-07 1.65e-05
Smp_004780.3 Smp_074230.1 0.90 4.07e-06 1.00e-04
Smp_074390.1 Smp_004780.3 0.95 5.77e-08 7.44e-06
Smp_004780.3 Smp_074430.1 0.90 3.22e-06 1.00e-04
Smp_004780.3 Smp_077610.1 0.92 8.94e-07 4.93e-05
Smp_079770.2 Smp_004780.3 0.93 3.10e-07 2.36e-05
Smp_004780.3 Smp_081900.2 0.90 4.72e-06 1.00e-04
Smp_004780.3 Smp_086450.3 0.95 1.88e-08 3.48e-06
Smp_004780.3 Smp_086470.1 0.91 1.68e-06 7.70e-05
Smp_004780.3 Smp_094050.1 0.93 3.40e-07 2.51e-05
Smp_004780.3 Smp_102780.1 0.90 2.75e-06 1.00e-04
Smp_104270.1 Smp_004780.3 0.90 3.37e-06 1.00e-04
Smp_004780.3 Smp_119910.1 0.96 1.18e-08 2.54e-06
Smp_121930.1 Smp_004780.3 0.91 1.70e-06 7.78e-05
Smp_004780.3 Smp_121930.2 0.93 4.16e-07 2.89e-05
Smp_004780.3 Smp_122500.1 0.94 1.86e-07 1.65e-05
Smp_004780.3 Smp_123240.1 0.91 1.36e-06 6.65e-05
Smp_004780.3 Smp_124380.1 0.90 2.63e-06 1.00e-04
Smp_004780.3 Smp_126120.1 0.92 6.65e-07 4.00e-05
Smp_004780.3 Smp_127990.1 0.90 3.84e-06 1.00e-04
Smp_004780.3 Smp_128160.1 0.90 2.70e-06 1.00e-04
Smp_004780.3 Smp_130090.1 0.90 2.56e-06 1.00e-04
Smp_004780.3 Smp_130100.1 0.90 2.53e-06 1.00e-04
Smp_004780.3 Smp_131470.1 0.92 1.03e-06 5.47e-05
Smp_004780.3 Smp_131490.1 0.90 3.29e-06 1.00e-04
Smp_131500.1 Smp_004780.3 0.90 4.19e-06 1.00e-04
Smp_136620.1 Smp_004780.3 0.90 3.08e-06 1.00e-04
Smp_004780.3 Smp_136700.1 0.90 2.71e-06 1.00e-04
Smp_136760.1 Smp_004780.3 0.91 1.28e-06 6.36e-05
Smp_004780.3 Smp_140720.1 0.92 7.06e-07 4.18e-05
Smp_145510.1 Smp_004780.3 0.90 3.15e-06 1.00e-04
Smp_004780.3 Smp_153360.1 0.92 8.69e-07 4.83e-05
Smp_153630.1 Smp_004780.3 0.96 7.21e-09 1.83e-06
Smp_004780.3 Smp_155110.1 0.90 3.25e-06 1.00e-04
Smp_004780.3 Smp_157400.1 0.94 1.27e-07 1.28e-05
Smp_004780.3 Smp_158520.1 0.92 6.57e-07 3.97e-05
Smp_004780.3 Smp_158620.1 0.91 2.30e-06 9.60e-05
Smp_004780.3 Smp_159650.1 0.92 6.33e-07 3.87e-05
Smp_004780.3 Smp_161240.1 0.94 1.00e-07 1.08e-05
Smp_004780.3 Smp_161820.1 0.93 2.84e-07 2.22e-05
Smp_004780.3 Smp_162770.1 0.90 4.79e-06 1.00e-04
Smp_004780.3 Smp_164040.1 0.92 1.06e-06 5.57e-05
Smp_004780.3 Smp_166530.2 0.91 1.58e-06 7.37e-05
Smp_004780.3 Smp_166800.1 0.93 3.57e-07 2.60e-05
Smp_004780.3 Smp_168400.1 0.91 1.61e-06 7.47e-05
Smp_004780.3 Smp_172590.1 0.90 4.12e-06 1.00e-04
Smp_172610.1 Smp_004780.3 0.92 1.12e-06 5.78e-05
Smp_004780.3 Smp_179170.1 0.90 3.07e-06 1.00e-04
Smp_180500.1 Smp_004780.3 0.92 1.14e-06 5.86e-05
Smp_004780.3 Smp_180930.1 0.92 1.05e-06 5.53e-05
Smp_004780.3 Smp_181390.1 0.91 1.56e-06 7.33e-05
Smp_004780.3 Smp_191400.1 0.93 2.71e-07 2.14e-05
Smp_004780.3 Smp_192780.1 0.91 1.21e-06 6.13e-05
Smp_004780.3 Smp_194840.1 0.90 3.02e-06 1.00e-04
Smp_004780.3 Smp_199160.1 0.92 9.22e-07 5.04e-05
Smp_004780.3 Smp_199550.1 0.93 4.14e-07 2.88e-05
Smp_004780.3 Smp_201100.1 0.93 3.02e-07 2.31e-05
Smp_004780.3 Smp_202610.1 0.90 4.73e-06 1.00e-04
Smp_004780.3 Smp_203030.1 0.92 1.17e-06 5.96e-05
Smp_004780.3 Smp_203170.1 0.92 5.48e-07 3.50e-05
Smp_004780.3 Smp_204810.1 0.90 3.93e-06 1.00e-04
Smp_004780.3 Smp_204880.1 0.93 2.03e-07 1.76e-05
Smp_004780.3 Smp_209060.1 0.93 3.51e-07 2.57e-05