Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_004530.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_004530.1 0 -0.23 -3.64 -5.83 -5.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004530.1 SmLINC00037-IBu 0.90 2.54e-06 9.98e-05
Smp_004530.1 SmLINC00133-IBu 0.93 3.24e-07 2.32e-05
Smp_004530.1 SmLINC00282-IBu 0.91 1.91e-06 8.13e-05
Smp_004530.1 SmLINC00893-IBu 0.82 1.00e-04 2.00e-03
Smp_004530.1 SmLINC01462-IBu 0.84 7.42e-05 1.10e-03
Smp_004530.1 SmLINC01486-IBu 0.90 3.67e-06 1.00e-04
Smp_004530.1 SmLINC01637-IBu 0.84 7.13e-05 1.10e-03
Smp_004530.1 SmLINC02038-IBu 0.84 8.43e-05 1.20e-03
Smp_004530.1 SmLINC03056-IBu 0.85 4.94e-05 8.00e-04
Smp_004530.1 SmLINC03362-IBu 0.86 2.91e-05 5.00e-04
Smp_004530.1 SmLINC03769-IBu 0.85 4.77e-05 8.00e-04
Smp_004530.1 SmLINC03848-IBu 0.91 1.57e-06 7.10e-05
Smp_004530.1 SmLINC03930-IBu 0.92 5.97e-07 3.56e-05
Smp_004530.1 SmLINC04075-IBu 0.90 3.60e-06 1.00e-04
Smp_004530.1 SmLINC04366-IBu 0.84 6.25e-05 1.00e-03
Smp_004530.1 SmLINC04940-IBu 0.83 9.26e-05 1.30e-03
Smp_004530.1 SmLINC05284-IBu 0.80 3.00e-04 3.20e-03
Smp_004530.1 SmLINC05716-IBu 0.84 6.25e-05 1.00e-03
Smp_004530.1 SmLINC06210-IBu 0.82 1.00e-04 2.00e-03
Smp_004530.1 SmLINC06535-IBu 0.85 4.90e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004530.1 0 -0.23 -3.64 -5.83 -5.83
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004530.1 Smp_032970.1 0.94 1.64e-07 1.51e-05
Smp_004530.1 Smp_036270.4 0.92 8.67e-07 4.82e-05
Smp_004530.1 Smp_111640.1 0.90 3.63e-06 1.00e-04
Smp_004530.1 Smp_112090.1 0.92 8.98e-07 4.94e-05
Smp_004530.1 Smp_123000.1 0.94 9.72e-08 1.06e-05
Smp_125070.1 Smp_004530.1 0.92 6.95e-07 4.13e-05
Smp_004530.1 Smp_182090.1 0.93 2.79e-07 2.19e-05
Smp_004530.1 Smp_204360.1 0.90 3.16e-06 1.00e-04