Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_004230.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004230.1 SmLINC06535-IBu 0.86 3.82e-05 7.00e-04
Smp_004230.1 SmLINC06892-IBu 0.85 5.38e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004230.1 Smp_033000.1 0.95 5.81e-08 7.47e-06
Smp_004230.1 Smp_051230.4 0.91 1.62e-06 7.51e-05
Smp_004230.1 Smp_067980.1 0.95 5.29e-08 7.01e-06
Smp_083180.1 Smp_004230.1 0.96 1.03e-08 2.32e-06
Smp_106390.1 Smp_004230.1 0.90 2.75e-06 1.00e-04
Smp_004230.1 Smp_140680.2 0.90 4.46e-06 1.00e-04
Smp_004230.1 Smp_145810.2 0.92 6.52e-07 3.95e-05
Smp_150690.2 Smp_004230.1 0.93 2.18e-07 1.85e-05
Smp_004230.1 Smp_165180.1 0.96 4.98e-09 1.44e-06
Smp_004230.1 Smp_168080.2 0.92 6.48e-07 3.93e-05
Smp_004230.1 Smp_188900.1 0.96 1.44e-08 2.91e-06
Smp_004230.1 Smp_195070.1 0.94 1.23e-07 1.25e-05