Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_003770.1 Data

Correlation between Smp_003770.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_003770.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_003770.1 SmLINC02039-IBu 0.86 3.72e-05 6.00e-04
Smp_003770.1 SmLINC02678-IBu 0.93 2.65e-07 2.01e-05
Smp_003770.1 SmLINC02888-IBu 0.91 2.05e-06 8.56e-05
Smp_003770.1 SmLINC05989-IBu 0.81 2.00e-04 2.50e-03
Smp_003770.1 SmLINC06128-IBu 0.90 3.60e-06 1.00e-04

Correlation between Smp_003770.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_003770.1 Smp_018880.1 0.95 1.92e-08 3.54e-06
Smp_003770.1 Smp_071380.2 0.93 2.84e-07 2.22e-05
Smp_003770.1 Smp_102670.1 0.96 4.35e-09 1.32e-06
Smp_003770.1 Smp_106390.1 0.92 7.30e-07 4.27e-05
Smp_003770.1 Smp_133770.1 0.96 1.16e-08 2.53e-06
Smp_003770.1 Smp_134410.1 0.93 2.34e-07 1.94e-05
Smp_003770.1 Smp_149670.1 0.94 1.38e-07 1.35e-05
Smp_003770.1 Smp_152780.1 0.90 3.92e-06 1.00e-04
Smp_003770.1 Smp_153240.1 0.96 9.27e-09 2.17e-06
Smp_003770.1 Smp_169190.1 0.96 8.81e-09 2.09e-06
Smp_003770.1 Smp_178240.1 0.95 5.17e-08 6.91e-06
Smp_003770.1 Smp_185360.1 0.92 6.74e-07 4.04e-05