Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_003440.1 Data

Correlation between Smp_003440.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_003440.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_003440.1 0 -0.11 2.35 6.31 4.63

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_003440.1 SmLINC00171-IBu 0.87 1.60e-05 3.00e-04
Smp_003440.1 SmLINC00369-IBu 0.82 1.00e-04 1.90e-03
Smp_003440.1 SmLINC00477-IBu 0.97 4.18e-10 2.68e-07
Smp_003440.1 SmLINC00484-IBu 0.96 3.72e-09 1.11e-06
Smp_003440.1 SmLINC00548-IBu 0.92 7.95e-07 4.36e-05
Smp_003440.1 SmLINC00633-IBu 0.88 1.07e-05 2.00e-04
Smp_003440.1 SmLINC00769-IBu 0.96 8.07e-09 1.85e-06
Smp_003440.1 SmLINC01066-IBu 0.93 5.10e-07 3.19e-05
Smp_003440.1 SmLINC01122-IBu 0.86 2.93e-05 5.00e-04
Smp_003440.1 SmLINC01139-IBu 0.96 3.08e-09 9.81e-07
Smp_003440.1 SmLINC01171-IBu 0.82 1.00e-04 1.70e-03
Smp_003440.1 SmLINC01231-IBu 0.87 1.59e-05 3.00e-04
Smp_003440.1 SmLINC01431-IBu 0.80 2.00e-04 3.00e-03
Smp_003440.1 SmLINC01433-IBu 0.92 1.08e-06 5.43e-05
Smp_003440.1 SmLINC01435-IBu 0.93 3.53e-07 2.46e-05
Smp_003440.1 SmLINC01538-IBu 0.95 5.70e-08 6.97e-06
Smp_003440.1 SmLINC01569-IBu 0.88 9.97e-06 2.00e-04
Smp_003440.1 SmLINC01733-IBu 0.90 4.87e-06 1.00e-04
Smp_003440.1 SmLINC01746-IBu 0.94 1.12e-07 1.11e-05
Smp_003440.1 SmLINC01822-IBu 0.93 4.08e-07 2.73e-05
Smp_003440.1 SmLINC02546-IBu 0.81 2.00e-04 2.50e-03
Smp_003440.1 SmLINC02581-IBu 0.83 9.39e-05 1.30e-03
Smp_003440.1 SmLINC03309-IBu 0.96 2.78e-09 9.16e-07
Smp_003440.1 SmLINC03542-IBu 0.95 2.48e-08 3.95e-06
Smp_003440.1 SmLINC03693-IBu 0.93 2.49e-07 1.93e-05
Smp_003440.1 SmLINC04054-IBu 0.98 2.53e-12 1.05e-08
Smp_003440.1 SmLINC04345-IBu 0.99 1.76e-12 8.48e-09
Smp_003440.1 SmLINC04432-IBu 0.91 1.91e-06 8.14e-05
Smp_003440.1 SmLINC04475-IBu 0.95 4.45e-08 5.89e-06
Smp_003440.1 SmLINC04478-IBu 0.82 1.00e-04 2.10e-03
Smp_003440.1 SmLINC04521-IBu 0.86 2.99e-05 5.00e-04
Smp_003440.1 SmLINC04637-IBu 0.92 6.57e-07 3.81e-05
Smp_003440.1 SmLINC04663-IBu 0.98 9.14e-12 2.35e-08
Smp_003440.1 SmLINC04684-IBu 0.86 3.35e-05 6.00e-04
Smp_003440.1 SmLINC04747-IBu 0.98 1.10e-10 1.13e-07
Smp_003440.1 SmLINC04769-IBu 0.96 1.07e-08 2.24e-06
Smp_003440.1 SmLINC04953-IBu 0.86 3.20e-05 6.00e-04
Smp_003440.1 SmLINC05009-IBu 0.94 1.17e-07 1.14e-05
Smp_003440.1 SmLINC05147-IBu 0.87 1.59e-05 3.00e-04
Smp_003440.1 SmLINC05171-IBu 0.97 4.09e-10 2.64e-07
Smp_003440.1 SmLINC05258-IBu 0.90 3.12e-06 1.00e-04
Smp_003440.1 SmLINC05870-IBu 0.81 2.00e-04 2.70e-03
Smp_003440.1 SmLINC06007-IBu 0.92 1.10e-06 5.52e-05
Smp_003440.1 SmLINC06010-IBu 0.95 4.55e-08 5.98e-06
Smp_003440.1 SmLINC06221-IBu 0.95 4.29e-08 5.75e-06
Smp_003440.1 SmLINC06418-IBu 0.91 1.67e-06 7.39e-05
Smp_003440.1 SmLINC06444-IBu 0.96 2.31e-09 8.12e-07
Smp_003440.1 SmLINC06449-IBu 0.94 1.32e-07 1.24e-05
Smp_003440.1 SmLINC06536-IBu 0.94 1.81e-07 1.54e-05
Smp_003440.1 SmLINC06537-IBu 0.91 2.02e-06 8.48e-05
Smp_003440.1 SmLINC06538-IBu 0.85 5.16e-05 8.00e-04
Smp_003440.1 SmLINC06543-IBu 0.93 2.03e-07 1.68e-05

Correlation between Smp_003440.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_003440.1 0 -0.11 2.35 6.31 4.63
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_003440.1 Smp_005470.1 0.95 5.22e-08 6.95e-06
Smp_014780.1 Smp_003440.1 0.95 3.19e-08 4.98e-06
Smp_003440.1 Smp_017610.1 0.98 6.38e-11 8.78e-08
Smp_003440.1 Smp_034980.2 0.92 1.11e-06 5.75e-05
Smp_003440.1 Smp_045200.1 0.97 1.96e-09 7.84e-07
Smp_058140.3 Smp_003440.1 0.90 3.40e-06 1.00e-04
Smp_003440.1 Smp_068270.1 0.97 3.53e-10 2.62e-07
Smp_081920.1 Smp_003440.1 0.91 1.41e-06 6.80e-05
Smp_003440.1 Smp_082580.1 0.97 1.52e-09 6.68e-07
Smp_003440.1 Smp_084270.1 0.98 1.53e-11 3.58e-08
Smp_003440.1 Smp_105730.1 0.98 7.03e-11 9.35e-08
Smp_118560.1 Smp_003440.1 0.97 5.33e-10 3.40e-07
Smp_003440.1 Smp_123200.1 0.93 2.65e-07 2.11e-05
Smp_003440.1 Smp_125200.1 0.97 3.80e-10 2.74e-07
Smp_003440.1 Smp_125210.1 0.98 1.10e-11 2.91e-08
Smp_003440.1 Smp_128510.1 0.96 2.39e-09 8.93e-07
Smp_003440.1 Smp_131840.1 0.97 2.71e-10 2.20e-07
Smp_003440.1 Smp_134960.1 0.98 1.08e-10 1.22e-07
Smp_137320.1 Smp_003440.1 0.90 2.60e-06 1.00e-04
Smp_003440.1 Smp_141680.1 0.94 1.14e-07 1.19e-05
Smp_150980.2 Smp_003440.1 0.94 1.92e-07 1.69e-05
Smp_003440.1 Smp_154180.1 0.97 4.59e-10 3.09e-07
Smp_154190.1 Smp_003440.1 0.98 3.39e-11 5.91e-08
Smp_160360.1 Smp_003440.1 0.99 3.20e-14 8.07e-10
Smp_163940.1 Smp_003440.1 0.94 8.66e-08 9.81e-06
Smp_003440.1 Smp_164550.1 0.99 3.56e-13 3.49e-09
Smp_003440.1 Smp_170280.1 0.97 1.50e-09 6.60e-07
Smp_172480.1 Smp_003440.1 0.92 8.31e-07 4.68e-05
Smp_003440.1 Smp_172520.1 0.95 1.77e-08 3.34e-06
Smp_003440.1 Smp_175020.1 0.97 3.31e-10 2.52e-07
Smp_003440.1 Smp_194960.1 0.98 5.35e-11 7.86e-08
Smp_003440.1 Smp_194970.1 0.97 2.25e-10 1.96e-07
Smp_194980.1 Smp_003440.1 0.97 2.02e-09 8.01e-07
Smp_197400.1 Smp_003440.1 0.99 1.57e-12 8.75e-09
Smp_003440.1 Smp_200750.1 0.97 9.94e-10 5.07e-07
Smp_003440.1 Smp_205270.1 0.93 3.34e-07 2.48e-05