Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_002930.1 Data

Correlation between Smp_002930.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_002930.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002930.1 SmLINC02255-IBu 0.85 4.87e-05 8.00e-04
Smp_002930.1 SmLINC02630-IBu 0.85 5.43e-05 9.00e-04
Smp_002930.1 SmLINC02657-IBu 0.81 1.00e-04 2.20e-03
Smp_002930.1 SmLINC02678-IBu 0.86 3.58e-05 6.00e-04
Smp_002930.1 SmLINC02888-IBu 0.81 2.00e-04 2.30e-03
Smp_002930.1 SmLINC05989-IBu 0.84 6.06e-05 9.00e-04
Smp_002930.1 SmLINC06128-IBu 0.95 1.88e-08 3.28e-06

Correlation between Smp_002930.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_002930.1 0 -1.91 -4.36 -9.53 -9.53
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002930.1 Smp_018880.1 0.90 3.34e-06 1.00e-04
Smp_002930.1 Smp_065580.1 0.95 6.02e-08 7.66e-06
Smp_102670.1 Smp_002930.1 0.92 5.60e-07 3.55e-05
Smp_134410.1 Smp_002930.1 0.91 1.55e-06 7.29e-05
Smp_149670.1 Smp_002930.1 0.94 1.33e-07 1.31e-05
Smp_002930.1 Smp_169190.1 0.91 1.45e-06 6.94e-05
Smp_206150.1 Smp_002930.1 0.93 4.55e-07 3.07e-05