Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_002920.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_002920.1 0 0.04 -0.86 -3.56 -4.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002920.1 SmLINC00001-IBu -0.84 6.02e-05 9.00e-04
Smp_002920.1 SmLINC00004-IBu -0.87 2.34e-05 4.00e-04
Smp_002920.1 SmLINC00026-IBu 0.88 1.18e-05 3.00e-04
Smp_002920.1 SmLINC00037-IBu 0.85 4.15e-05 7.00e-04
Smp_002920.1 SmLINC00133-IBu 0.81 2.00e-04 2.70e-03
Smp_002920.1 SmLINC00282-IBu 0.81 2.00e-04 2.40e-03
Smp_002920.1 SmLINC00294-IBu 0.92 7.66e-07 4.24e-05
Smp_002920.1 SmLINC00369-IBu -0.84 6.11e-05 9.00e-04
Smp_002920.1 SmLINC00525-IBu -0.82 1.00e-04 1.70e-03
Smp_002920.1 SmLINC00893-IBu 0.84 8.31e-05 1.20e-03
Smp_002920.1 SmLINC01084-IBu -0.87 2.43e-05 5.00e-04
Smp_002920.1 SmLINC01122-IBu -0.80 2.00e-04 3.10e-03
Smp_002920.1 SmLINC01431-IBu -0.87 1.79e-05 4.00e-04
Smp_002920.1 SmLINC01462-IBu 0.87 2.13e-05 4.00e-04
Smp_002920.1 SmLINC01486-IBu 0.82 1.00e-04 1.80e-03
Smp_002920.1 SmLINC01637-IBu 0.90 4.49e-06 1.00e-04
Smp_002920.1 SmLINC02084-IBu -0.85 3.95e-05 7.00e-04
Smp_002920.1 SmLINC02394-IBu -0.82 1.00e-04 1.80e-03
Smp_002920.1 SmLINC02539-IBu -0.80 2.00e-04 3.00e-03
Smp_002920.1 SmLINC02546-IBu -0.82 1.00e-04 1.90e-03
Smp_002920.1 SmLINC03395-IBu 0.89 7.83e-06 2.00e-04
Smp_002920.1 SmLINC03849-IBu 0.80 2.00e-04 2.80e-03
Smp_002920.1 SmLINC03927-IBu -0.82 1.00e-04 1.90e-03
Smp_002920.1 SmLINC04075-IBu 0.83 1.00e-04 1.40e-03
Smp_002920.1 SmLINC04129-IBu 0.82 1.00e-04 1.80e-03
Smp_002920.1 SmLINC04271-IBu 0.89 5.80e-06 1.00e-04
Smp_002920.1 SmLINC04421-IBu -0.87 2.27e-05 4.00e-04
Smp_002920.1 SmLINC04423-IBu -0.83 9.57e-05 1.30e-03
Smp_002920.1 SmLINC04478-IBu -0.80 2.00e-04 2.80e-03
Smp_002920.1 SmLINC04521-IBu -0.81 2.00e-04 2.40e-03
Smp_002920.1 SmLINC05147-IBu -0.83 1.00e-04 1.40e-03
Smp_002920.1 SmLINC05274-IBu 0.81 1.00e-04 2.20e-03
Smp_002920.1 SmLINC05284-IBu 0.85 5.55e-05 9.00e-04
Smp_002920.1 SmLINC05289-IBu -0.84 8.60e-05 1.20e-03
Smp_002920.1 SmLINC05604-IBu -0.85 4.10e-05 7.00e-04
Smp_002920.1 SmLINC05716-IBu 0.82 1.00e-04 1.90e-03
Smp_002920.1 SmLINC06024-IBu -0.90 3.86e-06 1.00e-04
Smp_002920.1 SmLINC06489-IBu 0.86 2.79e-05 5.00e-04
Smp_002920.1 SmLINC06490-IBu 0.84 7.75e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_002920.1 0 0.04 -0.86 -3.56 -4.70
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002920.1 Smp_033050.2 0.92 6.47e-07 3.93e-05
Smp_033260.1 Smp_002920.1 -0.90 4.59e-06 1.00e-04
Smp_038870.2 Smp_002920.1 -0.93 2.03e-07 1.76e-05
Smp_002920.1 Smp_176230.2 0.92 1.14e-06 5.88e-05
Smp_212510.1 Smp_002920.1 0.96 1.12e-08 2.47e-06