Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_002820.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_002820.3 0 -0.31 -1.11 -4.63 -4.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002820.3 SmLINC00001-IBu -0.86 3.83e-05 7.00e-04
Smp_002820.3 SmLINC00004-IBu -0.87 1.82e-05 4.00e-04
Smp_002820.3 SmLINC00026-IBu 0.80 3.00e-04 3.20e-03
Smp_002820.3 SmLINC00294-IBu 0.83 1.00e-04 1.40e-03
Smp_002820.3 SmLINC00369-IBu -0.87 1.54e-05 3.00e-04
Smp_002820.3 SmLINC00525-IBu -0.81 2.00e-04 2.40e-03
Smp_002820.3 SmLINC00556-IBu 0.80 3.00e-04 3.40e-03
Smp_002820.3 SmLINC00633-IBu -0.81 2.00e-04 2.30e-03
Smp_002820.3 SmLINC01084-IBu -0.87 2.33e-05 4.00e-04
Smp_002820.3 SmLINC01122-IBu -0.83 1.00e-04 1.50e-03
Smp_002820.3 SmLINC01431-IBu -0.90 4.80e-06 1.00e-04
Smp_002820.3 SmLINC01432-IBu -0.84 6.08e-05 9.00e-04
Smp_002820.3 SmLINC01538-IBu -0.80 2.00e-04 3.10e-03
Smp_002820.3 SmLINC01569-IBu -0.82 1.00e-04 1.90e-03
Smp_002820.3 SmLINC01637-IBu 0.82 1.00e-04 1.70e-03
Smp_002820.3 SmLINC01733-IBu -0.82 1.00e-04 2.10e-03
Smp_002820.3 SmLINC01746-IBu -0.80 2.00e-04 3.00e-03
Smp_002820.3 SmLINC02084-IBu -0.87 1.71e-05 3.00e-04
Smp_002820.3 SmLINC02255-IBu 0.80 2.00e-04 2.90e-03
Smp_002820.3 SmLINC02394-IBu -0.84 8.80e-05 1.20e-03
Smp_002820.3 SmLINC02539-IBu -0.80 2.00e-04 2.90e-03
Smp_002820.3 SmLINC02546-IBu -0.83 8.91e-05 1.30e-03
Smp_002820.3 SmLINC03849-IBu 0.81 2.00e-04 2.70e-03
Smp_002820.3 SmLINC03927-IBu -0.84 7.52e-05 1.10e-03
Smp_002820.3 SmLINC04271-IBu 0.83 9.06e-05 1.30e-03
Smp_002820.3 SmLINC04421-IBu -0.87 1.66e-05 3.00e-04
Smp_002820.3 SmLINC04423-IBu -0.84 6.62e-05 1.00e-03
Smp_002820.3 SmLINC04478-IBu -0.83 1.00e-04 1.50e-03
Smp_002820.3 SmLINC04521-IBu -0.84 7.33e-05 1.10e-03
Smp_002820.3 SmLINC05147-IBu -0.86 3.71e-05 6.00e-04
Smp_002820.3 SmLINC05274-IBu 0.94 1.02e-07 1.04e-05
Smp_002820.3 SmLINC05284-IBu 0.84 8.18e-05 1.20e-03
Smp_002820.3 SmLINC05289-IBu -0.85 5.02e-05 8.00e-04
Smp_002820.3 SmLINC05604-IBu -0.86 2.96e-05 5.00e-04
Smp_002820.3 SmLINC06024-IBu -0.88 1.42e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_002820.3 0 -0.31 -1.11 -4.63 -4.63
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002820.3 Smp_015850.2 0.92 7.17e-07 4.22e-05
Smp_002820.3 Smp_033050.2 0.90 3.27e-06 1.00e-04
Smp_033260.1 Smp_002820.3 -0.91 1.54e-06 7.24e-05
Smp_038870.2 Smp_002820.3 -0.92 5.85e-07 3.66e-05
Smp_050350.3 Smp_002820.3 -0.90 4.06e-06 1.00e-04
Smp_002820.3 Smp_052280.2 -0.91 1.76e-06 7.97e-05
Smp_002820.3 Smp_056460.1 -0.90 2.67e-06 1.00e-04
Smp_169670.1 Smp_002820.3 -0.91 1.42e-06 6.86e-05
Smp_002820.3 Smp_176230.2 0.93 3.67e-07 2.65e-05
Smp_194860.1 Smp_002820.3 -0.90 2.83e-06 1.00e-04