Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_002640.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_002640.1 0 -3.78 -3.97 -2.17 -4.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002640.1 SmLINC02039-IBu 0.87 2.30e-05 4.00e-04
Smp_002640.1 SmLINC02678-IBu 0.84 6.03e-05 9.00e-04
Smp_002640.1 SmLINC06892-IBu 0.80 3.00e-04 3.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_002640.1 0 -3.78 -3.97 -2.17 -4.00
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002640.1 Smp_009650.2 0.92 1.06e-06 5.59e-05
Smp_002640.1 Smp_133770.1 0.92 1.01e-06 5.40e-05
Smp_002640.1 Smp_153240.1 0.92 6.55e-07 3.96e-05
Smp_002640.1 Smp_178240.1 0.92 5.60e-07 3.55e-05