Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_002150.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_002150.1 0 2.53 7.46 9.01 9.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002150.1 SmLINC01431-IBu 0.85 5.74e-05 7.00e-04
Smp_002150.1 SmLINC04271-IBu -0.74 1.40e-03 8.10e-03
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_002150.1 0 2.53 7.46 9.01 9.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002150.1 SmLINC00001-IBu 0.82 1.00e-04 1.70e-03
Smp_002150.1 SmLINC00004-IBu 0.85 5.87e-05 9.00e-04
Smp_002150.1 SmLINC00266-IBu 0.88 9.49e-06 2.00e-04
Smp_002150.1 SmLINC00369-IBu 0.82 1.00e-04 1.70e-03
Smp_002150.1 SmLINC00525-IBu 0.87 2.40e-05 5.00e-04
Smp_002150.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_002150.1 SmLINC00633-IBu 0.82 1.00e-04 1.80e-03
Smp_002150.1 SmLINC01084-IBu 0.87 2.29e-05 4.00e-04
Smp_002150.1 SmLINC01431-IBu 0.85 5.74e-05 9.00e-04
Smp_002150.1 SmLINC01432-IBu 0.86 2.53e-05 5.00e-04
Smp_002150.1 SmLINC01520-IBu 0.83 1.00e-04 1.40e-03
Smp_002150.1 SmLINC02084-IBu 0.88 1.16e-05 2.00e-04
Smp_002150.1 SmLINC02255-IBu -0.87 2.39e-05 5.00e-04
Smp_002150.1 SmLINC02539-IBu 0.85 5.77e-05 9.00e-04
Smp_002150.1 SmLINC02540-IBu 0.81 2.00e-04 2.30e-03
Smp_002150.1 SmLINC02545-IBu 0.89 5.13e-06 1.00e-04
Smp_002150.1 SmLINC02546-IBu 0.81 2.00e-04 2.50e-03
Smp_002150.1 SmLINC02577-IBu 0.81 1.00e-04 2.30e-03
Smp_002150.1 SmLINC02630-IBu -0.81 2.00e-04 2.50e-03
Smp_002150.1 SmLINC02657-IBu -0.85 4.91e-05 8.00e-04
Smp_002150.1 SmLINC03108-IBu 0.83 1.00e-04 1.50e-03
Smp_002150.1 SmLINC03849-IBu -0.84 8.26e-05 1.20e-03
Smp_002150.1 SmLINC03927-IBu 0.92 5.21e-07 3.24e-05
Smp_002150.1 SmLINC04421-IBu 0.92 8.45e-07 4.55e-05
Smp_002150.1 SmLINC05147-IBu 0.80 2.00e-04 2.80e-03
Smp_002150.1 SmLINC05274-IBu -0.80 2.00e-04 3.00e-03
Smp_002150.1 SmLINC05284-IBu -0.83 1.00e-04 1.50e-03
Smp_002150.1 SmLINC05289-IBu 0.85 4.71e-05 8.00e-04
Smp_002150.1 SmLINC05604-IBu 0.91 1.65e-06 7.32e-05
Smp_002150.1 SmLINC06024-IBu 0.83 1.00e-04 1.40e-03
Smp_002150.1 SmLINC06415-IBu 0.82 1.00e-04 1.90e-03
Smp_002150.1 SmLINC06535-IBu -0.83 9.27e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_002150.1 0 2.53 7.46 9.01 9.87
Smp_056460.1 0 0.00 0.00 11.24 12.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_056460.1 Smp_002150.1 0.9 2.99e-06 1.00e-04