Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_002060.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_002060.1 0 3.48 -2.22 3.63 5.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002060.1 SmLINC00001-IBu 0.83 9.40e-05 1.30e-03
Smp_002060.1 SmLINC00004-IBu 0.81 2.00e-04 2.40e-03
Smp_002060.1 SmLINC01520-IBu 0.80 2.00e-04 3.00e-03
Smp_002060.1 SmLINC02029-IBu 0.81 2.00e-04 2.50e-03
Smp_002060.1 SmLINC02394-IBu 0.83 1.00e-04 1.60e-03
Smp_002060.1 SmLINC02539-IBu 0.83 1.00e-04 1.50e-03
Smp_002060.1 SmLINC02540-IBu 0.80 3.00e-04 3.20e-03
Smp_002060.1 SmLINC02577-IBu 0.82 1.00e-04 1.80e-03
Smp_002060.1 SmLINC02783-IBu 0.81 2.00e-04 2.70e-03
Smp_002060.1 SmLINC03326-IBu 0.81 2.00e-04 2.70e-03
Smp_002060.1 SmLINC04235-IBu 0.81 2.00e-04 2.60e-03
Smp_002060.1 SmLINC04627-IBu 0.84 7.59e-05 1.10e-03
Smp_002060.1 SmLINC05289-IBu 0.82 1.00e-04 2.10e-03
Smp_002060.1 SmLINC05684-IBu 0.81 2.00e-04 2.30e-03