Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_001830.2 Data

Correlation between Smp_001830.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_001830.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_001830.2 SmLINC03848-IBu 0.89 5.05e-06 1.00e-04
Smp_001830.2 SmLINC05989-IBu 0.89 7.15e-06 2.00e-04

Correlation between Smp_001830.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC04166-IBu 0 -0.32 -5.44 -5.44 -5.07
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
SmLINC05971-IBu 0 -0.67 -3.32 -4.64 -5.79
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_124830.1 0 -0.28 -9.93 -2.55 -3.33
Smp_139790.1 0 -0.75 -6.56 -6.76 -3.63
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_162070.1 0 -0.47 -3.26 -7.76 -6.95
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_199470.1 0 -0.59 -3.42 -6.26 -6.59

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_001830.2 SmLINC04166-IBu 0.91 2.08e-06 8.97e-05
Smp_001830.2 SmLINC04864-IBu 0.93 4.41e-07 3.01e-05
Smp_001830.2 SmLINC05971-IBu 0.90 2.79e-06 1.00e-04
Smp_009310.1 Smp_001830.2 0.93 2.97e-07 2.29e-05
Smp_001830.2 Smp_051230.4 0.93 2.77e-07 2.18e-05
Smp_001830.2 Smp_124830.1 0.92 7.89e-07 4.51e-05
Smp_139790.1 Smp_001830.2 0.91 1.33e-06 6.52e-05
Smp_150450.1 Smp_001830.2 0.91 2.23e-06 9.39e-05
Smp_001830.2 Smp_162070.1 0.91 1.56e-06 7.31e-05
Smp_001830.2 Smp_195070.1 0.90 3.18e-06 1.00e-04
Smp_199470.1 Smp_001830.2 0.90 3.48e-06 1.00e-04