Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_000900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_000900.1 0 3.50 3.43 6.11 5.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000900.1 SmLINC00171-IBu 0.86 3.69e-05 6.00e-04
Smp_000900.1 SmLINC00477-IBu 0.91 2.01e-06 8.45e-05
Smp_000900.1 SmLINC00484-IBu 0.87 1.85e-05 4.00e-04
Smp_000900.1 SmLINC00548-IBu 0.85 4.86e-05 8.00e-04
Smp_000900.1 SmLINC00633-IBu 0.81 2.00e-04 2.60e-03
Smp_000900.1 SmLINC00769-IBu 0.86 3.74e-05 6.00e-04
Smp_000900.1 SmLINC01066-IBu 0.92 1.11e-06 5.52e-05
Smp_000900.1 SmLINC01139-IBu 0.86 2.51e-05 5.00e-04
Smp_000900.1 SmLINC01171-IBu 0.86 2.85e-05 5.00e-04
Smp_000900.1 SmLINC01231-IBu 0.82 1.00e-04 1.80e-03
Smp_000900.1 SmLINC01433-IBu 0.90 3.99e-06 1.00e-04
Smp_000900.1 SmLINC01435-IBu 0.87 1.56e-05 3.00e-04
Smp_000900.1 SmLINC01538-IBu 0.85 5.63e-05 9.00e-04
Smp_000900.1 SmLINC01733-IBu 0.80 3.00e-04 3.40e-03
Smp_000900.1 SmLINC01746-IBu 0.84 6.07e-05 9.00e-04
Smp_000900.1 SmLINC01822-IBu 0.89 5.65e-06 1.00e-04
Smp_000900.1 SmLINC02581-IBu 0.89 5.47e-06 1.00e-04
Smp_000900.1 SmLINC03236-IBu 0.86 2.88e-05 5.00e-04
Smp_000900.1 SmLINC03309-IBu 0.88 1.30e-05 3.00e-04
Smp_000900.1 SmLINC03542-IBu 0.89 7.00e-06 2.00e-04
Smp_000900.1 SmLINC03693-IBu 0.92 5.93e-07 3.55e-05
Smp_000900.1 SmLINC04054-IBu 0.93 4.60e-07 2.96e-05
Smp_000900.1 SmLINC04345-IBu 0.89 5.41e-06 1.00e-04
Smp_000900.1 SmLINC04432-IBu 0.85 5.20e-05 8.00e-04
Smp_000900.1 SmLINC04475-IBu 0.90 2.67e-06 1.00e-04
Smp_000900.1 SmLINC04481-IBu 0.83 1.00e-04 1.50e-03
Smp_000900.1 SmLINC04637-IBu 0.82 1.00e-04 1.70e-03
Smp_000900.1 SmLINC04663-IBu 0.87 1.72e-05 3.00e-04
Smp_000900.1 SmLINC04684-IBu 0.87 1.99e-05 4.00e-04
Smp_000900.1 SmLINC04747-IBu 0.88 1.05e-05 2.00e-04
Smp_000900.1 SmLINC04759-IBu 0.81 2.00e-04 2.60e-03
Smp_000900.1 SmLINC04769-IBu 0.90 4.05e-06 1.00e-04
Smp_000900.1 SmLINC05009-IBu 0.96 1.16e-08 2.36e-06
Smp_000900.1 SmLINC05147-IBu 0.80 2.00e-04 2.70e-03
Smp_000900.1 SmLINC05171-IBu 0.92 5.83e-07 3.50e-05
Smp_000900.1 SmLINC05258-IBu 0.89 7.73e-06 2.00e-04
Smp_000900.1 SmLINC05632-IBu 0.82 1.00e-04 1.90e-03
Smp_000900.1 SmLINC05990-IBu 0.83 1.00e-04 1.60e-03
Smp_000900.1 SmLINC06007-IBu 0.89 5.63e-06 1.00e-04
Smp_000900.1 SmLINC06010-IBu 0.90 4.11e-06 1.00e-04
Smp_000900.1 SmLINC06221-IBu 0.94 1.23e-07 1.18e-05
Smp_000900.1 SmLINC06418-IBu 0.87 1.85e-05 4.00e-04
Smp_000900.1 SmLINC06444-IBu 0.87 1.87e-05 4.00e-04
Smp_000900.1 SmLINC06449-IBu 0.85 4.06e-05 7.00e-04
Smp_000900.1 SmLINC06536-IBu 0.89 6.86e-06 2.00e-04
Smp_000900.1 SmLINC06538-IBu 0.82 1.00e-04 2.00e-03
Smp_000900.1 SmLINC06543-IBu 0.90 4.75e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000900.1 0 3.50 3.43 6.11 5.02
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000900.1 Smp_014780.1 0.90 4.70e-06 1.00e-04
Smp_000900.1 Smp_017610.1 0.90 3.16e-06 1.00e-04
Smp_000900.1 Smp_020760.2 0.90 3.37e-06 1.00e-04
Smp_000900.1 Smp_045200.1 0.91 2.19e-06 9.30e-05
Smp_000900.1 Smp_068270.1 0.90 4.25e-06 1.00e-04
Smp_000900.1 Smp_082580.1 0.90 3.40e-06 1.00e-04
Smp_000900.1 Smp_084270.1 0.92 6.13e-07 3.78e-05
Smp_000900.1 Smp_105730.1 0.90 4.48e-06 1.00e-04
Smp_000900.1 Smp_118560.1 0.94 9.27e-08 1.02e-05
Smp_000900.1 Smp_125200.1 0.90 4.13e-06 1.00e-04
Smp_000900.1 Smp_125210.1 0.93 4.06e-07 2.84e-05
Smp_000900.1 Smp_128510.1 0.90 3.87e-06 1.00e-04
Smp_000900.1 Smp_134960.1 0.91 1.50e-06 7.10e-05
Smp_000900.1 Smp_141480.1 0.92 6.13e-07 3.78e-05
Smp_000900.1 Smp_160360.1 0.90 3.16e-06 1.00e-04
Smp_000900.1 Smp_163940.1 0.91 2.28e-06 9.54e-05
Smp_000900.1 Smp_164550.1 0.90 3.31e-06 1.00e-04
Smp_000900.1 Smp_170280.1 0.91 1.22e-06 6.15e-05
Smp_000900.1 Smp_175020.1 0.93 4.08e-07 2.85e-05
Smp_000900.1 Smp_194960.1 0.90 2.82e-06 1.00e-04
Smp_000900.1 Smp_194970.1 0.91 2.36e-06 9.77e-05
Smp_000900.1 Smp_194980.1 0.91 2.45e-06 1.00e-04
Smp_000900.1 Smp_197400.1 0.90 4.09e-06 1.00e-04
Smp_000900.1 Smp_200750.1 0.92 6.09e-07 3.77e-05